diff options
| -rw-r--r-- | uploader/templates/phenotypes/add-phenotypes-with-rqtl2-bundle.html | 82 |
1 files changed, 24 insertions, 58 deletions
diff --git a/uploader/templates/phenotypes/add-phenotypes-with-rqtl2-bundle.html b/uploader/templates/phenotypes/add-phenotypes-with-rqtl2-bundle.html index a1953df..8f67baa 100644 --- a/uploader/templates/phenotypes/add-phenotypes-with-rqtl2-bundle.html +++ b/uploader/templates/phenotypes/add-phenotypes-with-rqtl2-bundle.html @@ -1,4 +1,4 @@ -{%extends "phenotypes/base.html"%} +{%extends "phenotypes/add-phenotypes-base.html"%} {%from "flash_messages.html" import flash_all_messages%} {%from "macro-table-pagination.html" import table_pagination%} {%from "phenotypes/macro-display-pheno-dataset-card.html" import display_pheno_dataset_card%} @@ -20,54 +20,35 @@ </li> {%endblock%} -{%block contents%} -{{flash_all_messages()}} - -<div class="row"> - <form id="frm-add-phenotypes" - method="POST" - enctype="multipart/form-data" - action="{{url_for('species.populations.phenotypes.add_phenotypes', - species_id=species.SpeciesId, - population_id=population.Id, - dataset_id=dataset.Id)}}"> - <legend>Add New Phenotypes</legend> - - <div class="form-text help-block"> - <p>Select the zip file bundle containing information on the phenotypes you - wish to upload, then click the "Upload Phenotypes" button below to - upload the data.</p> - <p>If you wish to upload the files individually instead, - <a href="{{url_for('species.populations.phenotypes.add_phenotypes', +{%block frm_add_phenotypes_documentation%} +<p>Select the zip file bundle containing information on the phenotypes you + wish to upload, then click the "Upload Phenotypes" button below to + upload the data.</p> +<p>If you wish to upload the files individually instead, + <a href="{{url_for('species.populations.phenotypes.add_phenotypes', species_id=species.SpeciesId, population_id=population.Id, dataset_id=dataset.Id)}}" - title="">click here</a>.</p> - <p>See the <a href="#section-file-formats">File Formats</a> section below - to get an understanding of what is expected of the bundle files you - upload.</p> - <p><strong class="text-warning">This will not update any existing phenotypes!</strong></p> - </div> - - <div class="form-group"> - <label for="finput-phenotypes-bundle" class="form-label"> - Phenotypes Bundle</label> - <input type="file" - id="finput-phenotypes-bundle" - name="phenotypes-bundle" - accept="application/zip, .zip" - required="required" - class="form-control" /> - </div> + title="">click here</a>.</p> +<p>See the <a href="#section-file-formats">File Formats</a> section below + to get an understanding of what is expected of the bundle files you + upload.</p> +{%endblock%} - <div class="form-group"> - <input type="submit" - value="upload phenotypes" - class="btn btn-primary" /> - </div> - </form> +{%block frm_add_phenotypes_elements%} +<div class="form-group"> + <label for="finput-phenotypes-bundle" class="form-label"> + Phenotypes Bundle</label> + <input type="file" + id="finput-phenotypes-bundle" + name="phenotypes-bundle" + accept="application/zip, .zip" + required="required" + class="form-control" /> </div> +{%endblock%} +{%block page_documentation%} <div class="row"> <h2 class="heading" id="section-file-formats">File Formats</h2> <p>We accept an extended form of the @@ -219,19 +200,4 @@ <code>pheno_transposed: True</code>, then the file will be a matrix of <em>phenotypes × individuals</em>.</p> </div> - -<div class="row text-warning"> - <h3 class="subheading">Notes for Devs (well… Fred, really.)</h3> - <p>Use the following resources for automated retrieval of certain data</p> - <ul> - <li><a href="https://www.ncbi.nlm.nih.gov/pmc/tools/developers/" - title="NCBI APIs: Retrieve articles' metadata etc."> - NCBI APIS</a></li> - </ul> -</div> - -{%endblock%} - -{%block sidebarcontents%} -{{display_pheno_dataset_card(species, population, dataset)}} {%endblock%} |