aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
-rw-r--r--scripts/load_phenotypes_to_db.py8
1 files changed, 5 insertions, 3 deletions
diff --git a/scripts/load_phenotypes_to_db.py b/scripts/load_phenotypes_to_db.py
index 9d8b82f..a49d80b 100644
--- a/scripts/load_phenotypes_to_db.py
+++ b/scripts/load_phenotypes_to_db.py
@@ -2,17 +2,19 @@ import uuid
import json
import logging
import argparse
-from typing import Union
from pathlib import Path
+from typing import Any, Union
from MySQLdb.cursors import Cursor, DictCursor
from gn_libs import jobs, mysqldb, sqlite3
from r_qtl import r_qtl2 as rqtl2
-from uploader.phenotypes.modes import save_phenotypes_data
-from uploader.publications.models import create_new_publications
+from uploader.phenotypes.models import save_phenotypes_data
from uploader.samples.models import samples_by_species_and_population
+from uploader.publications.models import (
+ create_new_publications,
+ fetch_publication_by_id)
from scripts.rqtl2.bundleutils import build_line_joiner, build_line_splitter