diff options
| -rw-r--r-- | qc_app/templates/index.html | 4 | ||||
| -rw-r--r-- | qc_app/templates/rqtl2/select-geno-dataset.html | 28 | ||||
| -rw-r--r-- | qc_app/templates/rqtl2/select-probeset-dataset.html | 35 | ||||
| -rw-r--r-- | qc_app/templates/rqtl2/select-probeset-study-id.html | 25 |
4 files changed, 84 insertions, 8 deletions
diff --git a/qc_app/templates/index.html b/qc_app/templates/index.html index 358b521..00714f0 100644 --- a/qc_app/templates/index.html +++ b/qc_app/templates/index.html @@ -21,7 +21,7 @@ <button class="btn btn-main">upload R/qtl2 bundle</button></a> </div> -<h2>Expression Data</h2> +<h2 class="heading">Expression Data</h2> <div class="explainer"> <p>This application assumes that you are familiar with the basics of data @@ -112,7 +112,7 @@ </form> </div> -<h2>samples/cases</h2> +<h2 class="heading">samples/cases</h2> <div class="explainer"> <p>For the expression data above, you need the samples/cases in your file to diff --git a/qc_app/templates/rqtl2/select-geno-dataset.html b/qc_app/templates/rqtl2/select-geno-dataset.html index 64f886e..1964a79 100644 --- a/qc_app/templates/rqtl2/select-geno-dataset.html +++ b/qc_app/templates/rqtl2/select-geno-dataset.html @@ -43,6 +43,10 @@ <option value="{{dset['Id']}}">{{dset["Name"]}} ({{dset["FullName"]}})</option> {%endfor%} </select> + <span class="form-col-2"> + Select from the existing genotype datasets for species + {{species.SpeciesName}} ({{species.FullName}}). + </span> </fieldset> <fieldset> @@ -76,6 +80,9 @@ id="txt:dataset-name" name="dataset-name" required="required" /> + <span class="form-col-2"> + Provide the new name for the genotype dataset, e.g. "BXDGeno" + </span> </fieldset> <fieldset> @@ -84,21 +91,36 @@ id="txt:dataset-fullname" name="dataset-fullname" required="required" /> + + <span class="form-col-2"> + Provide a longer name that better describes the genotype dataset, e.g. + "BXD Genotypes" + </span> </fieldset> <fieldset> <label for="txt:dataset-shortname">Short Name</label> <input type="text" id="txt:dataset-shortname" - name="dataset-shortname" - required="required" /> + name="dataset-shortname" /> + + <span class="form-col-2"> + Provide a short name for the genotype dataset. This is optional. If not + provided, we'll default to the same value as the "Name" above. + </span> </fieldset> <fieldset> <input type="checkbox" id="chk:dataset-public" - name="dataset-public" /> + name="dataset-public" + checked="checked" /> <label for="chk:dataset-public">Public?</label> + + <span class="form-col-2"> + Specify whether the dataset will be available publicly. Check to make the + dataset publicly available and uncheck to limit who can access the dataset. + </span> </fieldset> <fieldset> diff --git a/qc_app/templates/rqtl2/select-probeset-dataset.html b/qc_app/templates/rqtl2/select-probeset-dataset.html index 3e160fd..ebd715e 100644 --- a/qc_app/templates/rqtl2/select-probeset-dataset.html +++ b/qc_app/templates/rqtl2/select-probeset-dataset.html @@ -45,6 +45,8 @@ </option> {%endfor%} </select> + + <span class="form-col-2">Select from existing ProbeSet datasets.</span> </fieldset> <fieldset> @@ -57,6 +59,10 @@ <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p> {%endif%} +<div class="explainer"> + <p>Create an entirely new ProbeSet dataset for your data.</p> +</div> + <form method="POST" action="{{url_for('upload.rqtl2.create_probeset_dataset', species_id=species.SpeciesId, population_id=population.Id)}}" @@ -86,6 +92,10 @@ </option> {%endfor%} </select> + + <span class="form-col-2"> + Select the averaging method used for your data. + </span> </fieldset> <fieldset> @@ -93,6 +103,11 @@ <input type="text" id="txt:datasetname" name="datasetname" required="required" title="Name of the dataset, e.g 'BXDMicroArray_ProbeSet_June03'. (Required)" /> + + <span class="form-col-2"> + Provide a name for the dataset e.g. "BXDMicroArray_ProbeSet_June03". This + is mandatory <strong>MUST</strong> be provided. + </span> </fieldset> <fieldset> @@ -100,12 +115,23 @@ <input type="text" id="txt:datasetfullname" name="datasetfullname" required="required" title="A longer name for the dataset, e.g. 'UTHSC Brain mRNA U74Av2 (Jun03) MAS5'. (Required)" /> + + <span class="form-col-2"> + Provide a longer, more descriptive name for the dataset e.g. + "UTHSC Brain mRNA U74Av2 (Jun03) MAS5". This is mandatory and + <strong>MUST</strong> be provided. + </span> </fieldset> <fieldset> <label for="txt:datasetshortname">Short Name</label> <input type="text" id="txt:datasetshortname" name="datasetshortname" title="An abbreviated name for the dataset, e.g 'Br_U_0603_M'. (Optional)" /> + + <span class="form-col-2"> + Provide a longer, more descriptive name for the dataset e.g. "Br_U_0603_M". + This is optional. + </span> </fieldset> <fieldset> @@ -113,6 +139,11 @@ checked="checked" title="Whether or not the dataset is accessible by the general public." /> <label for="chk:datasetpublic">Public?</label> + + <span class="form-col-2"> + Check to specify that the dataset will be publicly available. Uncheck to + limit access to the dataset. + </span> </fieldset> <fieldset> @@ -126,6 +157,10 @@ <option value="linear">linear</option> <option value="linear_positive">linear_positive</option> </select> + + <span class="form-col-2"> + Select from a list of scaling methods. + </span> </fieldset> <fieldset> diff --git a/qc_app/templates/rqtl2/select-probeset-study-id.html b/qc_app/templates/rqtl2/select-probeset-study-id.html index 34aa54e..35fe655 100644 --- a/qc_app/templates/rqtl2/select-probeset-study-id.html +++ b/qc_app/templates/rqtl2/select-probeset-study-id.html @@ -9,7 +9,7 @@ <div class="explainer"> <p>The R/qtl2 bundle you uploaded contains (a) "<strong>pheno</strong>" file(s). This data needs to be organised under a study.</p> - <p>This page gives you the ability to do that.</p> + <p>In this page, you can either select from a existing dataset:</p> </div> {{flash_all_messages()}} @@ -43,6 +43,7 @@ </option> {%endfor%} </select> + <span class="form-col-2">Select from existing ProbeSet studies.</span> </fieldset> <fieldset> @@ -54,6 +55,10 @@ <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p> +<div class="explainer"> + <p>Create a new ProbeSet dataset below:</p> +</div> + <form method="POST" action="{{url_for('upload.rqtl2.create_probeset_study', species_id=species.SpeciesId, population_id=population.Id)}}" @@ -80,6 +85,8 @@ </option> {%endfor%} </select> + <span class="form-col-2">Select from a list of known genomics platforms. + </span> </fieldset> <fieldset> @@ -95,6 +102,9 @@ </option> {%endfor%} </select> + <span class="form-col-2"> + Select the Tissue to which the data is concerned. + </span> </fieldset> <fieldset> @@ -102,18 +112,27 @@ <input type="text" id="txt:studyname" name="studyname" placeholder="Name of the study. (Required)" required="required" /> + <span class="form-col-2">Provide a name for the study.</span> </fieldset> <fieldset> - <label for="txt:studyfullname">Study name</label> + <label for="txt:studyfullname">Full Study Name</label> <input type="text" id="txt:studyfullname" name="studyfullname" placeholder="Longer name of the study. (Optional)" /> + <span class="form-col-2"> + Provide a longer, more descriptive name for the study. This is optional + and you can leave it blank. + </span> </fieldset> <fieldset> - <label for="txt:studyshortname">Study name</label> + <label for="txt:studyshortname">Short Study Name</label> <input type="text" id="txt:studyshortname" name="studyshortname" placeholder="Shorter name of the study. (Optional)" /> + <span class="form-col-2"> + Provide a shorter name for the study. This is optional and you can leave + it blank. + </span> </fieldset> <fieldset> |