Move R/qtl2 upload code under the populations package.

1 files changed, 0 insertions, 115 deletions

diff --git a/uploader/templates/rqtl2/select-tissue.html b/uploader/templates/rqtl2/select-tissue.html
deleted file mode 100644
index fe3080a..0000000
--- a/uploader/templates/rqtl2/select-tissue.html
+++ /dev/null
@@ -1,115 +0,0 @@
-{%extends "base.html"%}
-{%from "flash_messages.html" import flash_messages%}
-
-{%block title%}Upload R/qtl2 Bundle{%endblock%}
-
-{%block contents%}
-<h2 class="heading">Tissue</h2>
-
-<div class="row">
-  <p>The data you are uploading concerns a tissue, cell, organ, or other
-    biological material used in an experiment.</p>
-  <p>Select the appropriate biological material below</p>
-</div>
-
-{%if tissues | length > 0%}
-<div class="row">
-  <form method="POST"
-        action="{{url_for('expression-data.rqtl2.select_tissue',
-	        species_id=species.SpeciesId, population_id=population.Id)}}"
-        id="frm:select-probeset-dataset">
-    <legend class="heading">Select from existing ProbeSet datasets</legend>
-    {{flash_messages("error-select-tissue")}}
-
-    <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
-    <input type="hidden" name="population_id"
-	   value="{{population.InbredSetId}}" />
-    <input type="hidden" name="rqtl2_bundle_file"
-	   value="{{rqtl2_bundle_file}}" />
-    <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
-
-    <div class="form-group">
-      <label class="form-label" for="select-tissue">Tissue</label>
-      <select id="select-tissue"
-	      name="tissueid"
-	      required="required"
-	      {%if tissues | length == 0%}disabled="disabled"{%endif%}
-              class="form-control"
-              aria-describedby="help-select-tissue">
-        <option value="">Select a tissue</option>
-        {%for tissue in tissues%}
-        <option value={{tissue.Id}}>
-	  {{tissue.Name}}
-	  {%if tissue.Short_Name%}
-	  -- ({{tissue.Short_Name}})
-	  {%endif%}
-        </option>
-        {%endfor%}
-      </select>
-
-      <span id="help-select-tissue" class="form-text text-muted">
-        Select from existing biological material.</span>
-    </div>
-
-    <button type="submit" class="btn btn-primary">use selected</button>
-  </form>
-</div>
-
-<div class="row">
-  <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
-</div>
-{%endif%}
-
-<div class="row">
-  <p>If you cannot find the biological material in the drop-down above, add it
-    to the system below.</p>
-
-  <form method="POST"
-        action="{{url_for('expression-data.rqtl2.create_tissue',
-	        species_id=species.SpeciesId, population_id=population.Id)}}"
-        id="frm:create-probeset-dataset">
-    <legend class="heading">Add new tissue, organ or biological material</legend>
-    {{flash_messages("error-create-tissue")}}
-
-    <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
-    <input type="hidden" name="population_id"
-	   value="{{population.InbredSetId}}" />
-    <input type="hidden" name="rqtl2_bundle_file"
-	   value="{{rqtl2_bundle_file}}" />
-    <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
-
-    <div class="form-group">
-      <label class="form-label" for="tissue-name">name</label>
-      <input type="text"
-             id="txt-tissuename"
-             name="tissuename"
-             required="required"
-             title = "A name to identify the tissue, organ or biological material."
-             class="form-control"
-             aria-describedby="help-tissue-name" />
-
-      <span class="form-text text-muted" id="help-tissue-name">
-        A name to identify the tissue, organ or biological material.
-      </span>
-    </div>
-
-    <div class="form-group">
-      <label for="txt-shortname" class="form-label">short name</label>
-      <input type="text" id="txt-tissueshortname" name="tissueshortname"
-	     required="required"
-	     maxlength="7"
-	     title="A short name (e.g. 'Mam') for the biological material."
-             class="form-control"
-             aria-describedby="help-tissue-short-name" />
-
-      <span class="form-text text-muted" id="help-tissue-short-name">
-        Provide a short name for the tissue, organ or biological material used in
-        the experiment.
-      </span>
-    </div>
-
-    <button type="submit" class="btn btn-primary" />add new material</button>
-</form>
-</div>
-
-{%endblock%}