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authorFrederick Muriuki Muriithi2024-09-23 14:30:15 -0500
committerFrederick Muriuki Muriithi2024-09-23 16:35:39 -0500
commit4285cc10e24d6410206329ba079406e9aa21cc30 (patch)
tree70f785460b14731634d0a4bd93ad5bbb9c5ba833 /uploader/templates/rqtl2/select-tissue.html
parent0b37b9b3fa4fead86787a705713645fa14530a54 (diff)
downloadgn-uploader-4285cc10e24d6410206329ba079406e9aa21cc30.tar.gz
Move R/qtl2 upload code under the populations package.
Diffstat (limited to 'uploader/templates/rqtl2/select-tissue.html')
-rw-r--r--uploader/templates/rqtl2/select-tissue.html115
1 files changed, 0 insertions, 115 deletions
diff --git a/uploader/templates/rqtl2/select-tissue.html b/uploader/templates/rqtl2/select-tissue.html
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--- a/uploader/templates/rqtl2/select-tissue.html
+++ /dev/null
@@ -1,115 +0,0 @@
-{%extends "base.html"%}
-{%from "flash_messages.html" import flash_messages%}
-
-{%block title%}Upload R/qtl2 Bundle{%endblock%}
-
-{%block contents%}
-<h2 class="heading">Tissue</h2>
-
-<div class="row">
- <p>The data you are uploading concerns a tissue, cell, organ, or other
- biological material used in an experiment.</p>
- <p>Select the appropriate biological material below</p>
-</div>
-
-{%if tissues | length > 0%}
-<div class="row">
- <form method="POST"
- action="{{url_for('expression-data.rqtl2.select_tissue',
- species_id=species.SpeciesId, population_id=population.Id)}}"
- id="frm:select-probeset-dataset">
- <legend class="heading">Select from existing ProbeSet datasets</legend>
- {{flash_messages("error-select-tissue")}}
-
- <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
- <input type="hidden" name="population_id"
- value="{{population.InbredSetId}}" />
- <input type="hidden" name="rqtl2_bundle_file"
- value="{{rqtl2_bundle_file}}" />
- <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
-
- <div class="form-group">
- <label class="form-label" for="select-tissue">Tissue</label>
- <select id="select-tissue"
- name="tissueid"
- required="required"
- {%if tissues | length == 0%}disabled="disabled"{%endif%}
- class="form-control"
- aria-describedby="help-select-tissue">
- <option value="">Select a tissue</option>
- {%for tissue in tissues%}
- <option value={{tissue.Id}}>
- {{tissue.Name}}
- {%if tissue.Short_Name%}
- -- ({{tissue.Short_Name}})
- {%endif%}
- </option>
- {%endfor%}
- </select>
-
- <span id="help-select-tissue" class="form-text text-muted">
- Select from existing biological material.</span>
- </div>
-
- <button type="submit" class="btn btn-primary">use selected</button>
- </form>
-</div>
-
-<div class="row">
- <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
-</div>
-{%endif%}
-
-<div class="row">
- <p>If you cannot find the biological material in the drop-down above, add it
- to the system below.</p>
-
- <form method="POST"
- action="{{url_for('expression-data.rqtl2.create_tissue',
- species_id=species.SpeciesId, population_id=population.Id)}}"
- id="frm:create-probeset-dataset">
- <legend class="heading">Add new tissue, organ or biological material</legend>
- {{flash_messages("error-create-tissue")}}
-
- <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
- <input type="hidden" name="population_id"
- value="{{population.InbredSetId}}" />
- <input type="hidden" name="rqtl2_bundle_file"
- value="{{rqtl2_bundle_file}}" />
- <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
-
- <div class="form-group">
- <label class="form-label" for="tissue-name">name</label>
- <input type="text"
- id="txt-tissuename"
- name="tissuename"
- required="required"
- title = "A name to identify the tissue, organ or biological material."
- class="form-control"
- aria-describedby="help-tissue-name" />
-
- <span class="form-text text-muted" id="help-tissue-name">
- A name to identify the tissue, organ or biological material.
- </span>
- </div>
-
- <div class="form-group">
- <label for="txt-shortname" class="form-label">short name</label>
- <input type="text" id="txt-tissueshortname" name="tissueshortname"
- required="required"
- maxlength="7"
- title="A short name (e.g. 'Mam') for the biological material."
- class="form-control"
- aria-describedby="help-tissue-short-name" />
-
- <span class="form-text text-muted" id="help-tissue-short-name">
- Provide a short name for the tissue, organ or biological material used in
- the experiment.
- </span>
- </div>
-
- <button type="submit" class="btn btn-primary" />add new material</button>
-</form>
-</div>
-
-{%endblock%}