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authorFrederick Muriuki Muriithi2024-07-25 11:07:33 -0500
committerFrederick Muriuki Muriithi2024-07-25 14:34:09 -0500
commit754e8f214b940e05298cb360ed829f5c685d55a5 (patch)
tree62c2c5b601746621f0949b38937ad232f006dee2 /uploader/templates/rqtl2/select-geno-dataset.html
parentde9e1b9fe37928b864bea28b408de6c14d04526b (diff)
downloadgn-uploader-754e8f214b940e05298cb360ed829f5c685d55a5.tar.gz
Rename module: qc_app --> uploader
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+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Upload R/qtl2 Bundle{%endblock%}
+
+{%block contents%}
+<h2 class="heading">Select Genotypes Dataset</h2>
+
+<div class="row">
+ <p>Your R/qtl2 files bundle contains a "geno" specification. You will
+ therefore need to select from one of the existing Genotype datasets or
+ create a new one.</p>
+ <p>This is the dataset where your data will be organised under.</p>
+</div>
+
+<div class="row">
+ <form id="frm-upload-rqtl2-bundle"
+ action="{{url_for('upload.rqtl2.select_geno_dataset',
+ species_id=species.SpeciesId,
+ population_id=population.InbredSetId)}}"
+ method="POST"
+ enctype="multipart/form-data">
+ <legend class="heading">select from existing genotype datasets</legend>
+
+ <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+ <input type="hidden" name="population_id"
+ value="{{population.InbredSetId}}" />
+ <input type="hidden" name="rqtl2_bundle_file"
+ value="{{rqtl2_bundle_file}}" />
+
+ {{flash_messages("error-rqtl2-select-geno-dataset")}}
+
+ <div class="form-group">
+ <legend>Datasets</legend>
+ <label for="select:geno-datasets" class="form-label">Dataset</label>
+ <select id="select:geno-datasets"
+ name="geno-dataset-id"
+ required="required"
+ {%if datasets | length == 0%}
+ disabled="disabled"
+ {%endif%}
+ class="form-control"
+ aria-describedby="help-geno-dataset-select-dataset">
+ <option value="">Select dataset</option>
+ {%for dset in datasets%}
+ <option value="{{dset['Id']}}">{{dset["Name"]}} ({{dset["FullName"]}})</option>
+ {%endfor%}
+ </select>
+ <span id="help-geno-dataset-select-dataset" class="form-text text-muted">
+ Select from the existing genotype datasets for species
+ {{species.SpeciesName}} ({{species.FullName}}).
+ </span>
+ </div>
+
+ <button type="submit" class="btn btn-primary">select dataset</button>
+ </form>
+</div>
+
+<div class="row">
+ <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
+</div>
+
+<div class="row">
+ <form id="frm-upload-rqtl2-bundle"
+ action="{{url_for('upload.rqtl2.create_geno_dataset',
+ species_id=species.SpeciesId,
+ population_id=population.InbredSetId)}}"
+ method="POST"
+ enctype="multipart/form-data">
+ <legend class="heading">create a new genotype dataset</legend>
+
+ <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+ <input type="hidden" name="population_id"
+ value="{{population.InbredSetId}}" />
+ <input type="hidden" name="rqtl2_bundle_file"
+ value="{{rqtl2_bundle_file}}" />
+
+ {{flash_messages("error-rqtl2-create-geno-dataset")}}
+
+ <div class="form-group">
+ <label for="txt:dataset-name" class="form-label">Name</label>
+ <input type="text"
+ id="txt:dataset-name"
+ name="dataset-name"
+ maxlength="100"
+ required="required"
+ class="form-control"
+ aria-describedby="help-geno-dataset-name" />
+ <span id="help-geno-dataset-name" class="form-text text-muted">
+ Provide the new name for the genotype dataset, e.g. "BXDGeno"
+ </span>
+ </div>
+
+ <div class="form-group">
+ <label for="txt:dataset-fullname" class="form-label">Full Name</label>
+ <input type="text"
+ id="txt:dataset-fullname"
+ name="dataset-fullname"
+ required="required"
+ maxlength="100"
+ class="form-control"
+ aria-describedby="help-geno-dataset-fullname" />
+
+ <span id="help-geno-dataset-fullname" class="form-text text-muted">
+ Provide a longer name that better describes the genotype dataset, e.g.
+ "BXD Genotypes"
+ </span>
+ </div>
+
+ <div class="form-group">
+ <label for="txt:dataset-shortname" class="form-label">Short Name</label>
+ <input type="text"
+ id="txt:dataset-shortname"
+ name="dataset-shortname"
+ maxlength="100"
+ class="form-control"
+ aria-describedby="help-geno-dataset-shortname" />
+
+ <span id="help-geno-dataset-shortname" class="form-text text-muted">
+ Provide a short name for the genotype dataset. This is optional. If not
+ provided, we'll default to the same value as the "Name" above.
+ </span>
+ </div>
+
+ <div class="form-group">
+ <input type="checkbox"
+ id="chk:dataset-public"
+ name="dataset-public"
+ checked="checked"
+ class="form-check"
+ aria-describedby="help-geno-datasent-public" />
+ <label for="chk:dataset-public" class="form-check-label">Public?</label>
+
+ <span id="help-geno-dataset-public" class="form-text text-muted">
+ Specify whether the dataset will be available publicly. Check to make the
+ dataset publicly available and uncheck to limit who can access the dataset.
+ </span>
+ </div>
+
+ <button type="submit" class="btn btn-primary">create new dataset</button>
+ </form>
+</div>
+
+{%endblock%}