Move R/qtl2 upload code under the populations package.

1 files changed, 66 insertions, 0 deletions

diff --git a/uploader/templates/populations/rqtl2/rqtl2-qc-job-results.html b/uploader/templates/populations/rqtl2/rqtl2-qc-job-results.html
new file mode 100644
index 0000000..b3c3a8f
--- /dev/null
+++ b/uploader/templates/populations/rqtl2/rqtl2-qc-job-results.html
@@ -0,0 +1,66 @@
+{%extends "base.html"%}
+{%from "cli-output.html" import cli_output%}
+
+{%block title%}R/qtl2 bundle: QC job results{%endblock%}
+
+{%block contents%}
+<h1 class="heading">R/qtl2 bundle: QC job results</h1>
+
+<div class="row">
+  <p>The R/qtl2 bundle you uploaded has passed all automated quality-control
+    checks successfully.</p>
+  <p>You may now continue to load the data into GeneNetwork for the bundle, with
+    the following details:</p>
+</div>
+
+<div class="row">
+  <form id="form-qc-job-results"
+        action="{{url_for('expression-data.rqtl2.select_dataset_info',
+	        species_id=species.SpeciesId,
+	        population_id=population.Id)}}"
+        method="POST">
+    <div class="form-group">
+      <legend>Species</legend>
+      <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+
+      <span class="form-label">Name</span>
+      <span class="form-text">{{species.Name | capitalize}}</span>
+
+      <span class="form-label">Scientific</span>
+      <span class="form-text">{{species.FullName | capitalize}}</span>
+    </div>
+
+    <div class="form-group">
+      <legend>population</legend>
+      <input type="hidden" name="population_id" value="{{population.Id}}" />
+
+      <span class="form-label">Name</span>
+      <span class="form-text">{{population.InbredSetName}}</span>
+
+      <span class="form-label">Full Name</span>
+      <span class="form-text">{{population.FullName}}</span>
+
+      <span class="form-label">Genetic Type</span>
+      <span class="form-text">{{population.GeneticType}}</span>
+
+      <span class="form-label">Description</span>
+      <span class="form-text">{{population.Description or "-"}}</span>
+    </div>
+
+    <div class="form-group">
+      <legend>R/qtl2 Bundle File</legend>
+      <input type="hidden" name="rqtl2_bundle_file" value="{{rqtl2bundle}}" />
+      <input type="hidden" name="original-filename" value="{{rqtl2bundleorig}}" />
+
+      <span class="form-label">Original Name</span>
+      <span class="form-text">{{rqtl2bundleorig}}</span>
+
+      <span class="form-label">Internal Name</span>
+      <span class="form-text">{{rqtl2bundle[0:25]}}&hellip;</span>
+    </div>
+
+    <button type="submit" class="btn btn-primary">continue</button>
+  </form>
+</div>
+
+{%endblock%}