Move R/qtl2 upload code under the populations package.

1 files changed, 54 insertions, 0 deletions

diff --git a/uploader/templates/populations/rqtl2/index.html b/uploader/templates/populations/rqtl2/index.html
new file mode 100644
index 0000000..ec6ffb8
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+++ b/uploader/templates/populations/rqtl2/index.html
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+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Data Upload{%endblock%}
+
+{%block contents%}
+<h1 class="heading">R/qtl2 data upload</h1>
+
+<h2>R/qtl2 Upload</h2>
+
+<div class="row">
+  <form method="POST" action="{{url_for('expression-data.rqtl2.select_species')}}"
+        id="frm-rqtl2-upload">
+    <legend class="heading">upload R/qtl2 bundle</legend>
+    {{flash_messages("error-rqtl2")}}
+
+    <div class="form-group">
+      <label for="select:species" class="form-label">Species</label>
+      <select id="select:species"
+              name="species_id"
+              required="required"
+              class="form-control">
+        <option value="">Select species</option>
+        {%for spec in species%}
+        <option value="{{spec.SpeciesId}}">{{spec.MenuName}}</option>
+        {%endfor%}
+      </select>
+      <small class="form-text text-muted">
+        Data that you upload to the system should belong to a know species.
+        Here you can select the species that you wish to upload data for.
+      </small>
+    </div>
+
+    <input type="submit" class="btn btn-primary" value="submit" />
+  </form>
+</div>
+
+<div class="row">
+  <h2 class="heading">R/qtl2 Bundles</h2>
+
+  <div class="explainer">
+    <p>This feature combines and extends the two upload methods below. Instead of
+      uploading one item at a time, the R/qtl2 bundle you upload can contain both
+      the genotypes data (samples/individuals/cases and their data) and the
+      expression data.</p>
+    <p>The R/qtl2 bundle, additionally, can contain extra metadata, that neither
+      of the methods below can handle.</p>
+
+    <a href="{{url_for('expression-data.rqtl2.select_species')}}"
+       title="Upload a zip bundle of R/qtl2 files">
+      <button class="btn btn-primary">upload R/qtl2 bundle</button></a>
+  </div>
+</div>
+{%endblock%}