Initialise "Platforms" section.

1 files changed, 103 insertions, 0 deletions

diff --git a/uploader/templates/platforms/create-platform.html b/uploader/templates/platforms/create-platform.html
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+++ b/uploader/templates/platforms/create-platform.html
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+{%extends "platforms/base.html"%}
+{%from "flash_messages.html" import flash_all_messages%}
+{%from "species/macro-display-species-card.html" import display_species_card%}
+
+{%block title%}Platforms — Create Platforms{%endblock%}
+
+{%block pagetitle%}Platforms — Create Platforms{%endblock%}
+
+{%block lvl3_breadcrumbs%}
+<li {%if activelink=="create-platform"%}
+    class="breadcrumb-item active"
+    {%else%}
+    class="breadcrumb-item"
+    {%endif%}>
+  <a href="{{url_for('species.platforms.create_platform',
+           species_id=species.SpeciesId)}}">create platform</a>
+</li>
+{%endblock%}
+
+{%block contents%}
+{{flash_all_messages()}}
+
+<div class="row">
+  <h2>Create New Platform</h2>
+
+  <p>You can create a new genetic sequencing platform below.</p>
+</div>
+
+<div class="row">
+  <form id="frm-create-platform"
+        method="POST"
+        action="{{url_for('species.platforms.create_platform',
+                species_id=species.SpeciesId)}}">
+
+    <div class="form-group">
+      <label for="txt-geo-platform" class="form-label">GEO Platform</label>
+      <input type="text"
+             id="txt-geo-platform"
+             name="geo-platform"
+             required="required"
+             class="form-control"  />
+      <small class="form-text text-muted">
+        <p>This is the platform's
+          <a href="https://www.ncbi.nlm.nih.gov/geo/browse/?view=platforms&tax={{species.TaxonomyId}}"
+             title="Platforms for '{{species.FullName}}' on NCBI">
+            accession value on NCBI</a>. If you do not know the value, click the
+          link and search on NCBI for species '{{species.FullName}}'.</p></small>
+    </div>
+
+    <div class="form-group">
+      <label for="txt-platform-name" class="form-label">Platform Name</label>
+      <input type="text"
+             id="txt-platform-name"
+             name="platform-name"
+             required="required"
+             class="form-control" />
+      <small class="form-text text-muted">
+        <p>This is name of the genetic sequencing platform.</p></small>
+    </div>
+
+    <div class="form-group">
+      <label for="txt-platform-shortname" class="form-label">
+        Platform Short Name</label>
+      <input type="text"
+             id="txt-platform-shortname"
+             name="platform-shortname"
+             required="required"
+             class="form-control" />
+      <small class="form-text text-muted">
+        <p>Use the following conventions for this field:
+          <ol>
+            <li>Start with a 4-letter vendor code, e.g. "Affy" for "Affymetrix", "Illu" for "Illumina", etc.</li>
+            <li>Append an underscore to the 4-letter vendor code</li>
+            <li>Use the name of the array given by the vendor, e.g.  U74AV2, MOE430A, etc.</li>
+          </ol>
+        </p>
+      </small>
+    </div>
+
+    <div class="form-group">
+      <label for="txt-platform-title" class="form-label">Platform Title</label>
+      <input type="text"
+             id="txt-platform-title"
+             name="platform-title"
+             required="required"
+             class="form-control"  />
+      <small class="form-text text-muted">
+        <p>The full platform title. Sometimes, this is the same as the Platform
+          Name above.</p></small>
+    </div>
+
+    <div class="form-group">
+      <input type="submit"
+             value="create new platform"
+             class="btn btn-primary"  />
+    </div>
+  </form>
+</div>
+{%endblock%}
+
+{%block sidebarcontents%}
+{{display_species_card(species)}}
+{%endblock%}