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authorFrederick Muriuki Muriithi2024-09-27 11:40:08 -0500
committerFrederick Muriuki Muriithi2024-09-27 11:40:08 -0500
commit0729e38e2f5bbc5ab23153adfed3d35ee59dc3d5 (patch)
treebd33450676c54be6444261b00c1d683a17b5366a /uploader/genotypes
parent1b6b9a90a4dbe38aefc00293309fb48d9f478b13 (diff)
downloadgn-uploader-0729e38e2f5bbc5ab23153adfed3d35ee59dc3d5.tar.gz
Extract common functionality into reusable function.
Diffstat (limited to 'uploader/genotypes')
-rw-r--r--uploader/genotypes/views.py22
1 files changed, 5 insertions, 17 deletions
diff --git a/uploader/genotypes/views.py b/uploader/genotypes/views.py
index 9f08ca6..0821eca 100644
--- a/uploader/genotypes/views.py
+++ b/uploader/genotypes/views.py
@@ -1,5 +1,4 @@
"""Views for the genotypes."""
-from requests.models import Response
from MySQLdb.cursors import DictCursor
from flask import (flash,
request,
@@ -14,6 +13,7 @@ from uploader.oauth2.client import oauth2_post
from uploader.authorisation import require_login
from uploader.db_utils import database_connection
from uploader.species.models import all_species, species_by_id
+from uploader.monadic_requests import make_either_error_handler
from uploader.request_checks import with_species, with_population
from uploader.datautils import safe_int, order_by_family, enumerate_sequence
from uploader.population.models import (populations_by_species,
@@ -186,21 +186,6 @@ def create_dataset(species: dict, population: dict, **kwargs):# pylint: disable=
species_id=species["SpeciesId"],
population_id=population["Id"]))
- def __fail__(error):
- msg = "There was an error creating the genotype dataset."
- if issubclass(type(error), Exception):
- app.logger.debug("\n\n%s (Exception)\n\n", msg, exc_info=True)
- raise error
- if issubclass(type(error), Response):
- try:
- _data = error.json()
- except Exception as _exc:
- raise Exception(error.content) from _exc
- raise Exception(_data)
-
- app.logger.debug("\n\n%s\n\n", msg)
- raise Exception(error)
-
return oauth2_post(
"auth/resource/genotypes/create",
json={
@@ -213,4 +198,7 @@ def create_dataset(species: dict, population: dict, **kwargs):# pylint: disable=
"dataset_shortname": form["geno-dataset-shortname"],
"public": "on"
}
- ).either(__fail__, __success__)
+ ).either(
+ make_either_error_handler(
+ "There was an error creating the genotype dataset."),
+ __success__)