Use gn-libs code for db connection.

Use the code in gn-libs to connect to the database, rather than a
local module.

1 files changed, 4 insertions, 3 deletions

diff --git a/uploader/genotypes/models.py b/uploader/genotypes/models.py
index 44c98b1..4c3e634 100644
--- a/uploader/genotypes/models.py
+++ b/uploader/genotypes/models.py
@@ -4,8 +4,9 @@ from datetime import datetime
 
 import MySQLdb as mdb
 from MySQLdb.cursors import Cursor, DictCursor
+from flask import current_app as app
 
-from uploader.db_utils import debug_query
+from gn_libs.mysqldb import debug_query
 
 def genocode_by_population(
         conn: mdb.Connection, population_id: int) -> tuple[dict, ...]:
@@ -38,7 +39,7 @@ def genotype_markers(
 
     with conn.cursor(cursorclass=DictCursor) as cursor:
         cursor.execute(_query, (species_id,))
-        debug_query(cursor)
+        debug_query(cursor, app.logger)
         return tuple(dict(row) for row in cursor.fetchall())
 
 
@@ -64,7 +65,7 @@ def genotype_dataset(
 
     with conn.cursor(cursorclass=DictCursor) as cursor:
         cursor.execute(_query, _params)
-        debug_query(cursor)
+        debug_query(cursor, app.logger)
         result = cursor.fetchone()
         if bool(result):
             return dict(result)