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authorFrederick Muriuki Muriithi2024-09-25 12:09:46 -0500
committerFrederick Muriuki Muriithi2024-09-25 12:11:58 -0500
commit3e028bf0e9f8239b552bcd4b2d6133bb7965abd9 (patch)
tree9a58c1b95748c99c04bec5e5f34d70f7070af287 /uploader/genotypes/models.py
parent44a07c95a3ae77441e1b45b9f5fba9c6d77a2871 (diff)
downloadgn-uploader-3e028bf0e9f8239b552bcd4b2d6133bb7965abd9.tar.gz
Create new genotype datasets.
Diffstat (limited to 'uploader/genotypes/models.py')
-rw-r--r--uploader/genotypes/models.py33
1 files changed, 32 insertions, 1 deletions
diff --git a/uploader/genotypes/models.py b/uploader/genotypes/models.py
index db8cc3e..44c98b1 100644
--- a/uploader/genotypes/models.py
+++ b/uploader/genotypes/models.py
@@ -1,8 +1,9 @@
"""Functions for handling genotypes."""
from typing import Optional
+from datetime import datetime
import MySQLdb as mdb
-from MySQLdb.cursors import DictCursor
+from MySQLdb.cursors import Cursor, DictCursor
from uploader.db_utils import debug_query
@@ -68,3 +69,33 @@ def genotype_dataset(
if bool(result):
return dict(result)
return None
+
+
+def save_new_dataset(
+ cursor: Cursor,
+ population_id: int,
+ name: str,
+ fullname: str,
+ shortname: str
+) -> dict:
+ """Save a new genotype dataset into the database."""
+ params = {
+ "InbredSetId": population_id,
+ "Name": name,
+ "FullName": fullname,
+ "ShortName": shortname,
+ "CreateTime": datetime.now().date().isoformat(),
+ "public": 2,
+ "confidentiality": 0,
+ "AuthorisedUsers": None
+ }
+ cursor.execute(
+ "INSERT INTO GenoFreeze("
+ "Name, FullName, ShortName, CreateTime, public, InbredSetId, "
+ "confidentiality, AuthorisedUsers"
+ ") VALUES ("
+ "%(Name)s, %(FullName)s, %(ShortName)s, %(CreateTime)s, %(public)s, "
+ "%(InbredSetId)s, %(confidentiality)s, %(AuthorisedUsers)s"
+ ")",
+ params)
+ return {**params, "Id": cursor.lastrowid}