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| author | Frederick Muriuki Muriithi | 2024-01-04 17:08:47 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-01-04 17:08:47 +0300 |
| commit | 6b2002f236188e3c2571af18642527b156ed60e0 (patch) | |
| tree | 27127f01a2868cb07ea271536d724a840df69ee8 /tests/r_qtl | |
| parent | 9eab14f7f6c40c401c29d11d69ac54303415ab87 (diff) | |
| download | gn-uploader-6b2002f236188e3c2571af18642527b156ed60e0.tar.gz | |
Parse cross information from R/qtl2 bundle.
Diffstat (limited to 'tests/r_qtl')
| -rw-r--r-- | tests/r_qtl/test_files/test_cross_info_01.zip | bin | 0 -> 597 bytes | |||
| -rw-r--r-- | tests/r_qtl/test_files/test_cross_info_02.zip | bin | 0 -> 778 bytes | |||
| -rw-r--r-- | tests/r_qtl/test_r_qtl2_cross_information.py | 35 |
3 files changed, 35 insertions, 0 deletions
diff --git a/tests/r_qtl/test_files/test_cross_info_01.zip b/tests/r_qtl/test_files/test_cross_info_01.zip Binary files differnew file mode 100644 index 0000000..1211f96 --- /dev/null +++ b/tests/r_qtl/test_files/test_cross_info_01.zip diff --git a/tests/r_qtl/test_files/test_cross_info_02.zip b/tests/r_qtl/test_files/test_cross_info_02.zip Binary files differnew file mode 100644 index 0000000..dddd281 --- /dev/null +++ b/tests/r_qtl/test_files/test_cross_info_02.zip diff --git a/tests/r_qtl/test_r_qtl2_cross_information.py b/tests/r_qtl/test_r_qtl2_cross_information.py new file mode 100644 index 0000000..f424267 --- /dev/null +++ b/tests/r_qtl/test_r_qtl2_cross_information.py @@ -0,0 +1,35 @@ +"""Test loading of cross information.""" + +from pathlib import Path + +import pytest +from zipfile import ZipFile + +from r_qtl import r_qtl2 as rqtl2 + +@pytest.mark.unit_test +@pytest.mark.parametrize( + "filepath,expected", + (("tests/r_qtl/test_files/test_cross_info_01.zip", + ({"id": "1", "cross_direction": 1}, + {"id": "2", "cross_direction": 1}, + {"id": "3", "cross_direction": 1}, + {"id": "71", "cross_direction": 0}, + {"id": "72", "cross_direction": 0}, + {"id": "146", "cross_direction": 1}, + {"id": "147", "cross_direction": 1}, + {"id": "148", "cross_direction": 1})), + ("tests/r_qtl/test_files/test_cross_info_02.zip", + ({"id": "1", "cross_direction": 1}, + {"id": "2", "cross_direction": 1}, + {"id": "3", "cross_direction": 1}, + {"id": "71", "cross_direction": 0}, + {"id": "72", "cross_direction": 0}, + {"id": "146", "cross_direction": 1}, + {"id": "147", "cross_direction": 1}, + {"id": "148", "cross_direction": 1})))) +def test_parse_cross_info(filepath, expected): + """Test parsing of cross information.""" + with ZipFile(Path(filepath).absolute(), "r") as zfile: + assert tuple(rqtl2.cross_information( + zfile, rqtl2.control_data(zfile))) == expected |