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| author | Frederick Muriuki Muriithi | 2024-01-03 16:53:40 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-01-03 16:53:40 +0300 |
| commit | 3e51fb24fd34bab2164a5f4056bc78d21827ca29 (patch) | |
| tree | 690a4f7453dd276ccb90c7101140117fdeb6f9e7 /tests/r_qtl/test_r_qtl2_pheno.py | |
| parent | 95d2b868adebbc7ebbc2435f9184c30c014ec513 (diff) | |
| download | gn-uploader-3e51fb24fd34bab2164a5f4056bc78d21827ca29.tar.gz | |
Use generic parser. Remove obsoleted functions.
Diffstat (limited to 'tests/r_qtl/test_r_qtl2_pheno.py')
| -rw-r--r-- | tests/r_qtl/test_r_qtl2_pheno.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/tests/r_qtl/test_r_qtl2_pheno.py b/tests/r_qtl/test_r_qtl2_pheno.py index 554d9c8..46be469 100644 --- a/tests/r_qtl/test_r_qtl2_pheno.py +++ b/tests/r_qtl/test_r_qtl2_pheno.py @@ -29,5 +29,5 @@ def test_parse_pheno_files(filepath, expected): THEN: verify the parsed data is as expected """ with ZipFile(Path(filepath).absolute(), "r") as zfile: - assert tuple( - rqtl2.phenotype_data(zfile, rqtl2.control_data(zfile))) == expected + cdata = rqtl2.control_data(zfile) + assert tuple(rqtl2.file_data(zfile, "pheno", cdata)) == expected |