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author | Frederick Muriuki Muriithi | 2024-10-17 10:26:15 -0500 |
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committer | Frederick Muriuki Muriithi | 2024-10-17 11:32:28 -0500 |
commit | 85215361b561d332cab954ea68438a2d442c96d8 (patch) | |
tree | 90a3115843770f5e3806762695223a7115a71d99 /tests/qc_app/test_parse.py | |
parent | 9db2d0986619bf801e2308ee55e4340d9f050376 (diff) | |
download | gn-uploader-85215361b561d332cab954ea68438a2d442c96d8.tar.gz |
Rename test module.
Diffstat (limited to 'tests/qc_app/test_parse.py')
-rw-r--r-- | tests/qc_app/test_parse.py | 96 |
1 files changed, 0 insertions, 96 deletions
diff --git a/tests/qc_app/test_parse.py b/tests/qc_app/test_parse.py deleted file mode 100644 index 076c47c..0000000 --- a/tests/qc_app/test_parse.py +++ /dev/null @@ -1,96 +0,0 @@ -"""Test the 'parse' module in the web-ui""" -import sys - -import redis -import pytest - -from uploader.jobs import job, jobsnamespace - -from tests.conftest import uploadable_file_object - -def test_parse_with_existing_uploaded_file(#pylint: disable=[too-many-arguments] - client, - db_url, - redis_url, - redis_ttl, - jobs_prefix, - job_id, - monkeypatch): - """ - GIVEN: 1. A flask application testing client - 2. A valid file, and filetype - WHEN: The file is uploaded, and the parsing triggered - THEN: Ensure that: - 1. the system redirects to the job/parse status page - 2. the job is placed on redis for processing - """ - monkeypatch.setattr("uploader.jobs.uuid4", lambda : job_id) - # Upload a file - speciesid = 1 - filename = "no_data_errors.tsv" - filetype = "average" - client.post( - "/upload", data={ - "speciesid": speciesid, - "filetype": filetype, - "qc_text_file": uploadable_file_object(filename)}) - # Checks - resp = client.get(f"/parse/parse?speciesid={speciesid}&filename={filename}" - f"&filetype={filetype}") - assert resp.status_code == 302 - assert b'Redirecting...' in resp.data - assert b'/parse/status/934c55d8-396e-4959-90e1-2698e9205758' in resp.data - - with redis.Redis.from_url(redis_url, decode_responses=True) as rconn: - the_job = job(rconn, jobsnamespace(), job_id) - - assert the_job["jobid"] == job_id - assert the_job["filename"] == filename - assert the_job["command"] == " ".join([ - sys.executable, "-m", "scripts.validate_file", db_url, redis_url, - jobs_prefix, job_id, "--redisexpiry", str(redis_ttl), str(speciesid), - filetype, f"{client.application.config['UPLOAD_FOLDER']}/{filename}"]) - -@pytest.mark.parametrize( - "filename,uri,error_msgs", - (("non_existent.file", - "/parse/parse?filename=non_existent.file&filename=average", - [b'Selected file does not exist (any longer)']), - ("non_existent.file", - "/parse/parse?filename=non_existent.file&filename=standard-error", - [b'Selected file does not exist (any longer)']), - ("non_existent.file", - "/parse/parse?filename=non_existent.file&filename=percival", - [b'Selected file does not exist (any longer)', - b'Invalid filetype provided']), - ("no_data_errors.tsv", - "/parse/parse?filename=no_data_errors.tsv&filename=percival", - [b'Invalid filetype provided']), - ("no_data_errors.tsv", - "/parse/parse?filename=no_data_errors.tsv", - [b'No filetype provided']), - (None, "/parse/parse", [b'No file provided', b'No filetype provided']))) -def test_parse_with_non_uploaded_file(client, filename, uri, error_msgs): - """ - GIVEN: 1. A flask application testing client - 2. A valid filetype - 3. A filename to a file that has not been uploaded yet - WHEN: The parsing triggered - THEN: Ensure that the appropriate errors are displayed - """ - ## Conditionally upload files - if filename and filename != "non_existent.file": - client.post( - "/upload", data={ - "filetype": "average", - "qc_text_file": uploadable_file_object(filename)}) - # Trigger - resp = client.get(uri,follow_redirects=True) - ## Check that there was exactly one redirect - assert len(resp.history) == 1 and resp.history[0].status_code == 302 - ## Check that redirect is to home page and is successful - assert resp.request.path == "/upload" - assert resp.status_code == 200 - ## Check that error(s) are displayed - for error_msg in error_msgs: - assert error_msg in resp.data |