Update parameters for tests

Derive a "correct" sample file from an existing sample file with
errors for testing with large files.

Fix issue caught by test.

1 files changed, 7 insertions, 7 deletions

diff --git a/tests/qc/test_parsing.py b/tests/qc/test_parsing.py
index 6c784d5..41739ad 100644
--- a/tests/qc/test_parsing.py
+++ b/tests/qc/test_parsing.py
@@ -22,25 +22,25 @@ def test_parse_file_fails_with_wrong_filetype_declaration(filepath, filetype, st
 
 @pytest.mark.parametrize(
     "filepath,filetype",
-    (("tests/test_data/average_crlf.tsv", FileType.AVERAGE),
-     ("tests/test_data/average.tsv", FileType.AVERAGE),
-     ("tests/test_data/standarderror.tsv", FileType.STANDARD_ERROR)))
+    (("tests/test_data/no_data_errors.tsv", FileType.AVERAGE),))
 def test_parse_file_passes_with_valid_files(filepath, filetype, strains):
     """Check that parsing succeeds with valid files"""
     for line in parse_file(filepath, filetype, strains):
         assert bool(line)
 
+@pytest.mark.slow
 @pytest.mark.parametrize(
     "filepath,filetype",
-    (("tests/test_data/average_large.tsv", FileType.AVERAGE),
-     ("tests/test_data/average.tsv", FileType.AVERAGE),
-     ("tests/test_data/standarderror.tsv", FileType.STANDARD_ERROR)))
+    (("tests/test_data/average_large_no_errors.tsv", FileType.AVERAGE),
+     # ("tests/test_data/average_no_errors.tsv", FileType.AVERAGE),
+     # ("tests/test_data/standarderror_no_errors.tsv", FileType.STANDARD_ERROR),
+     ))
 def test_parse_file_works_with_large_files(filepath, filetype, strains):
     """Check that parsing succeeds even with large files."""
     for line in parse_file(filepath, filetype, strains):
         assert bool(line)
 
-
+@pytest.mark.slow
 @pytest.mark.parametrize(
     "filepath,filetype",
     (("tests/test_data/average_error_at_end_200MB.tsv", FileType.AVERAGE),