From 7cd50dbc6dc5c14bb211699e7a7103e4f1453edd Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 20 Apr 2022 13:40:05 +0300
Subject: Update parameters for tests

Derive a "correct" sample file from an existing sample file with
errors for testing with large files.

Fix issue caught by test.
---
 tests/qc/test_parsing.py | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

(limited to 'tests/qc')

diff --git a/tests/qc/test_parsing.py b/tests/qc/test_parsing.py
index 6c784d5..41739ad 100644
--- a/tests/qc/test_parsing.py
+++ b/tests/qc/test_parsing.py
@@ -22,25 +22,25 @@ def test_parse_file_fails_with_wrong_filetype_declaration(filepath, filetype, st
 
 @pytest.mark.parametrize(
     "filepath,filetype",
-    (("tests/test_data/average_crlf.tsv", FileType.AVERAGE),
-     ("tests/test_data/average.tsv", FileType.AVERAGE),
-     ("tests/test_data/standarderror.tsv", FileType.STANDARD_ERROR)))
+    (("tests/test_data/no_data_errors.tsv", FileType.AVERAGE),))
 def test_parse_file_passes_with_valid_files(filepath, filetype, strains):
     """Check that parsing succeeds with valid files"""
     for line in parse_file(filepath, filetype, strains):
         assert bool(line)
 
+@pytest.mark.slow
 @pytest.mark.parametrize(
     "filepath,filetype",
-    (("tests/test_data/average_large.tsv", FileType.AVERAGE),
-     ("tests/test_data/average.tsv", FileType.AVERAGE),
-     ("tests/test_data/standarderror.tsv", FileType.STANDARD_ERROR)))
+    (("tests/test_data/average_large_no_errors.tsv", FileType.AVERAGE),
+     # ("tests/test_data/average_no_errors.tsv", FileType.AVERAGE),
+     # ("tests/test_data/standarderror_no_errors.tsv", FileType.STANDARD_ERROR),
+     ))
 def test_parse_file_works_with_large_files(filepath, filetype, strains):
     """Check that parsing succeeds even with large files."""
     for line in parse_file(filepath, filetype, strains):
         assert bool(line)
 
-
+@pytest.mark.slow
 @pytest.mark.parametrize(
     "filepath,filetype",
     (("tests/test_data/average_error_at_end_200MB.tsv", FileType.AVERAGE),
-- 
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