Remove obsoleted code. Fix linting errors.

Remove the old code that relied on exceptions to parse errors in the
uploaded files.

1 files changed, 0 insertions, 53 deletions

diff --git a/tests/qc/test_parsing.py b/tests/qc/test_parsing.py
deleted file mode 100644
index 41739ad..0000000
--- a/tests/qc/test_parsing.py
+++ /dev/null
@@ -1,53 +0,0 @@
-"""Test the parsing of the files"""
-import pytest
-
-from quality_control.errors import ParseError
-from quality_control.parsing import FileType, parse_file
-
-@pytest.mark.parametrize(
-    "filepath,filetype",
-    (("tests/test_data/average_crlf.tsv", FileType.STANDARD_ERROR),
-     ("tests/test_data/average_error_at_end_200MB.tsv",
-      FileType.STANDARD_ERROR),
-     ("tests/test_data/average.tsv", FileType.STANDARD_ERROR),
-     ("tests/test_data/standarderror_1_error_at_end.tsv", FileType.AVERAGE),
-     ("tests/test_data/standarderror.tsv", FileType.AVERAGE),
-     ("tests/test_data/duplicated_headers_no_data_errors.tsv",
-      FileType.STANDARD_ERROR),))
-def test_parse_file_fails_with_wrong_filetype_declaration(filepath, filetype, strains):
-    """Check that parsing fails if the wrong file type is declared"""
-    with pytest.raises(ParseError):
-        for line in parse_file(filepath, filetype, strains): # pylint: disable=[unused-variable]
-            pass
-
-@pytest.mark.parametrize(
-    "filepath,filetype",
-    (("tests/test_data/no_data_errors.tsv", FileType.AVERAGE),))
-def test_parse_file_passes_with_valid_files(filepath, filetype, strains):
-    """Check that parsing succeeds with valid files"""
-    for line in parse_file(filepath, filetype, strains):
-        assert bool(line)
-
-@pytest.mark.slow
-@pytest.mark.parametrize(
-    "filepath,filetype",
-    (("tests/test_data/average_large_no_errors.tsv", FileType.AVERAGE),
-     # ("tests/test_data/average_no_errors.tsv", FileType.AVERAGE),
-     # ("tests/test_data/standarderror_no_errors.tsv", FileType.STANDARD_ERROR),
-     ))
-def test_parse_file_works_with_large_files(filepath, filetype, strains):
-    """Check that parsing succeeds even with large files."""
-    for line in parse_file(filepath, filetype, strains):
-        assert bool(line)
-
-@pytest.mark.slow
-@pytest.mark.parametrize(
-    "filepath,filetype",
-    (("tests/test_data/average_error_at_end_200MB.tsv", FileType.AVERAGE),
-     ("tests/test_data/standarderror_1_error_at_end.tsv", FileType.STANDARD_ERROR),
-     ("tests/test_data/duplicated_headers_no_data_errors.tsv", FileType.AVERAGE)))
-def test_parse_file_raises_exception_on_error_in_file(filepath, filetype, strains):
-    "Check that parsing fails if any error is found in a file"
-    with pytest.raises(ParseError):
-        for line in parse_file(filepath, filetype, strains): # pylint: disable=[unused-variable]
-            pass