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authorFrederick Muriuki Muriithi2025-12-19 12:53:20 -0600
committerFrederick Muriuki Muriithi2025-12-19 12:53:20 -0600
commit56ed0f57b816b1023a97b7205268deed0a45c77e (patch)
tree29bad7b0b2ff78230d80b5c5ec76eb2822b8d84b /scripts/rqtl2/install_genotypes.py
parentd04b7cb89b3fbaa1689f8f6525a2740eda7c3be3 (diff)
downloadgn-uploader-56ed0f57b816b1023a97b7205268deed0a45c77e.tar.gz
Fix issues caught by type-checker.
Diffstat (limited to 'scripts/rqtl2/install_genotypes.py')
-rw-r--r--scripts/rqtl2/install_genotypes.py6
1 files changed, 3 insertions, 3 deletions
diff --git a/scripts/rqtl2/install_genotypes.py b/scripts/rqtl2/install_genotypes.py
index 8762655..5e6abb0 100644
--- a/scripts/rqtl2/install_genotypes.py
+++ b/scripts/rqtl2/install_genotypes.py
@@ -20,7 +20,7 @@ from scripts.rqtl2.entry import build_main
 from scripts.rqtl2.cli_parser import add_common_arguments
 from scripts.cli_parser import init_cli_parser, add_global_data_arguments
 
-__MODULE__ = "scripts.rqtl2.install_genotypes"
+logger = getLogger(__name__)
 
 def insert_markers(
         dbconn: mdb.Connection,
@@ -191,7 +191,7 @@ def install_genotypes(#pylint: disable=[too-many-locals]
         dbconn: mdb.Connection,
         fullyqualifiedjobid: str,#pylint: disable=[unused-argument]
         args: argparse.Namespace,
-        logger: Logger = getLogger(__name__)
+        logger: Logger = logger # pylint: disable=[redefined-outer-name]
 ) -> int:
     """Load any existing genotypes into the database."""
     (speciesid, populationid, datasetid, rqtl2bundle) = (
@@ -257,5 +257,5 @@ if __name__ == "__main__":
 
         return parser.parse_args()
 
-    main = build_main(cli_args(), install_genotypes, __MODULE__)
+    main = build_main(cli_args(), install_genotypes, logger)
     sys.exit(main())