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| author | Frederick Muriuki Muriithi | 2025-12-19 12:53:20 -0600 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2025-12-19 12:53:20 -0600 |
| commit | 56ed0f57b816b1023a97b7205268deed0a45c77e (patch) | |
| tree | 29bad7b0b2ff78230d80b5c5ec76eb2822b8d84b /scripts/qc_on_rqtl2_bundle.py | |
| parent | d04b7cb89b3fbaa1689f8f6525a2740eda7c3be3 (diff) | |
| download | gn-uploader-56ed0f57b816b1023a97b7205268deed0a45c77e.tar.gz | |
Fix issues caught by type-checker.
Diffstat (limited to 'scripts/qc_on_rqtl2_bundle.py')
| -rw-r--r-- | scripts/qc_on_rqtl2_bundle.py | 9 |
1 files changed, 5 insertions, 4 deletions
diff --git a/scripts/qc_on_rqtl2_bundle.py b/scripts/qc_on_rqtl2_bundle.py index 0207938..4e6ef00 100644 --- a/scripts/qc_on_rqtl2_bundle.py +++ b/scripts/qc_on_rqtl2_bundle.py @@ -40,7 +40,7 @@ def add_to_errors(rconn: Redis, """Add `errors` to a given list of errors""" errs = tuple(dict(item) for item in set( [dict2tuple(old) for old in - json.loads(rconn.hget(fqjobid, key) or "[]")] + + json.loads(rconn.hget(fqjobid, key) or "[]")] +# type: ignore[arg-type] [dict2tuple({"type": type(error).__name__, **error._asdict()}) for error in errors])) rconn.hset(fqjobid, key, json.dumps(errs)) @@ -83,7 +83,8 @@ def retrieve_errors_with_progress(rconn: Redis,#pylint: disable=[too-many-locals count = 0 checked = 0 cdata = rqtl2.control_data(zfile) - rconn.hset(fqjobid, f"{filetype}-filesize", compute_filesize(zfile, filetype)) + rconn.hset( + fqjobid, f"{filetype}-filesize", str(compute_filesize(zfile, filetype))) def __update_processed__(value): nonlocal checked checked = checked + len(value) @@ -104,7 +105,7 @@ def retrieve_errors_with_progress(rconn: Redis,#pylint: disable=[too-many-locals yield error __update_processed__(value) - rconn.hset(fqjobid, f"{filetype}-linecount", count) + rconn.hset(fqjobid, f"{filetype}-linecount", count)# type: ignore[arg-type] except rqe.MissingFileException: fname = cdata.get(filetype) yield rqfe.MissingFile(filetype, fname, ( @@ -295,7 +296,7 @@ def run_qc(rconn: Redis, return 1 def __fetch_errors__(rkey: str) -> tuple: - return tuple(json.loads(rconn.hget(fqjobid, rkey) or "[]")) + return tuple(json.loads(rconn.hget(fqjobid, rkey) or "[]")) # type: ignore[arg-type] return (1 if any(( bool(__fetch_errors__(key)) |