aboutsummaryrefslogtreecommitdiff
path: root/scripts/insert_data.py
diff options
context:
space:
mode:
authorFrederick Muriuki Muriithi2025-07-14 13:49:08 -0500
committerFrederick Muriuki Muriithi2025-07-14 13:49:08 -0500
commiteb6c0f2bddee49907a04e9d78cbb24598a190c23 (patch)
tree2899d2026afbfd55cc523c89bf6b10adf5debf5b /scripts/insert_data.py
parent6f9a91f1cb92530ad50c608c1f59ff38acb1b1f5 (diff)
downloadgn-uploader-eb6c0f2bddee49907a04e9d78cbb24598a190c23.tar.gz
Fix linting issues.
Diffstat (limited to 'scripts/insert_data.py')
-rw-r--r--scripts/insert_data.py6
1 files changed, 3 insertions, 3 deletions
diff --git a/scripts/insert_data.py b/scripts/insert_data.py
index 67038f8..aec0251 100644
--- a/scripts/insert_data.py
+++ b/scripts/insert_data.py
@@ -197,7 +197,7 @@ def probeset_ids(dbconn: mdb.Connection,
break
yield row
-def insert_means(# pylint: disable=[too-many-locals, too-many-arguments]
+def insert_means(# pylint: disable=[too-many-locals, too-many-arguments, too-many-positional-arguments]
filepath: str, speciesid: int, platform_id: int, datasetid: int,
dbconn: mdb.Connection, rconn: Redis) -> int: # pylint: disable=[unused-argument]
"Insert the means/averages data into the database"
@@ -232,7 +232,7 @@ def insert_means(# pylint: disable=[too-many-locals, too-many-arguments]
item for sublist in
read_datavalues(filepath, headings, strains).values()
for item in sublist),
- start=(last_data_id(dbconn)+1)))
+ start=last_data_id(dbconn)+1))
with dbconn.cursor(cursorclass=DictCursor) as cursor:
while True:
means = tuple(take(the_means, 10000))
@@ -245,7 +245,7 @@ def insert_means(# pylint: disable=[too-many-locals, too-many-arguments]
cursor.executemany(xref_query, means)
return 0
-def insert_se(# pylint: disable = [too-many-arguments,too-many-locals]
+def insert_se(# pylint: disable = [too-many-arguments,too-many-locals, too-many-positional-arguments]
filepath: str, speciesid: int, platformid: int, datasetid: int,
dbconn: mdb.Connection, rconn: Redis) -> int: # pylint: disable=[unused-argument]
"Insert the standard-error data into the database"