BugFix: Check for equality rather than membership. Update keys.

1 files changed, 11 insertions, 11 deletions

diff --git a/scripts/genotypes/preprocess_csv_collect_info.py b/scripts/genotypes/preprocess_csv_collect_info.py
index a6671ff..0f475d5 100644
--- a/scripts/genotypes/preprocess_csv_collect_info.py
+++ b/scripts/genotypes/preprocess_csv_collect_info.py
@@ -25,28 +25,28 @@ def filecontents(path: Path) -> Iterator[str]:
 
 
 def identify_columns(
-        fields: tuple[str, ...],
+        headers: tuple[str, ...],
         settings: dict[str, str]
 ) -> FieldsIdentity:
     """Identify columns using settings provided by user"""
     _id = {}
-    for field in fields:
-        if field.lower() in settings["markers"].lower():
-            _id["marker_field"] = field
+    for header in headers:
+        if header.lower() == settings["markers"].lower():
+            _id["marker"] = header
             continue
-        if field.lower() in settings["chromosome"].lower():
-            _id["chromosome_field"] = field
+        if header.lower() == settings["chromosome"].lower():
+            _id["chromosome"] = header
             continue
-        if field.lower() in settings["cm"].lower():
+        if header.lower() == settings["cm"].lower():
             # linkage map: genetic distance
-            _id["centimorgan_field"] = field
+            _id["genetic_distance"] = header
             continue
-        if field.lower() in settings["mb"].lower():
+        if header.lower() == settings["mb"].lower():
             # physical map: physical distance
-            _id["megabases_field"] = field
+            _id["physical_distance"] = header
             continue
 
-        _id["samples_list"] = _id.get("samples_list") + (field,)
+        _id["samples"] = _id.get("samples", tuple()) + (header,)
 
     return FieldsIdentity(**_id)