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| author | Frederick Muriuki Muriithi | 2022-04-20 13:40:05 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-04-20 13:40:05 +0300 |
| commit | 7cd50dbc6dc5c14bb211699e7a7103e4f1453edd (patch) | |
| tree | fffd75cce2410ee7993d53a5447ef00e41b93165 /quality_control | |
| parent | 5897b6ec7fbd1226cd68a292122cc494e46f6829 (diff) | |
| download | gn-uploader-7cd50dbc6dc5c14bb211699e7a7103e4f1453edd.tar.gz | |
Update parameters for tests
Derive a "correct" sample file from an existing sample file with
errors for testing with large files.
Fix issue caught by test.
Diffstat (limited to 'quality_control')
| -rw-r--r-- | quality_control/parsing.py | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/quality_control/parsing.py b/quality_control/parsing.py index 6e5bb8f..abed22e 100644 --- a/quality_control/parsing.py +++ b/quality_control/parsing.py @@ -63,6 +63,7 @@ def parse_file(filepath: str, filetype: FileType, strains: list): if line_number == 0: yield __parse_header(line, strains) seek_pos = seek_pos + len(line) + continue yield LINE_PARSERS[filetype]( tuple(field.strip() for field in line.split("\t"))) |