From 7cd50dbc6dc5c14bb211699e7a7103e4f1453edd Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 20 Apr 2022 13:40:05 +0300
Subject: Update parameters for tests

Derive a "correct" sample file from an existing sample file with
errors for testing with large files.

Fix issue caught by test.
---
 quality_control/parsing.py | 1 +
 1 file changed, 1 insertion(+)

(limited to 'quality_control')

diff --git a/quality_control/parsing.py b/quality_control/parsing.py
index 6e5bb8f..abed22e 100644
--- a/quality_control/parsing.py
+++ b/quality_control/parsing.py
@@ -63,6 +63,7 @@ def parse_file(filepath: str, filetype: FileType, strains: list):
                 if line_number == 0:
                     yield __parse_header(line, strains)
                     seek_pos = seek_pos + len(line)
+                    continue
 
                 yield LINE_PARSERS[filetype](
                     tuple(field.strip() for field in line.split("\t")))
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