diff options
| author | Frederick Muriuki Muriithi | 2024-02-12 10:44:35 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-02-12 18:17:41 +0300 |
| commit | abb55d7e03bf207ebf00b4c71f1bbdd8f58a0ad3 (patch) | |
| tree | 65d97370d93b7ef19c271ef51f97d6d94b18a695 /qc_app | |
| parent | 523bd6634539a2e646a7cd4215ad3ee7dbbeeb66 (diff) | |
| download | gn-uploader-abb55d7e03bf207ebf00b4c71f1bbdd8f58a0ad3.tar.gz | |
Check for errors in the 'phenose' file.
Diffstat (limited to 'qc_app')
| -rw-r--r-- | qc_app/templates/rqtl2/rqtl2-qc-job-error.html | 8 | ||||
| -rw-r--r-- | qc_app/upload/rqtl2.py | 2 |
2 files changed, 10 insertions, 0 deletions
diff --git a/qc_app/templates/rqtl2/rqtl2-qc-job-error.html b/qc_app/templates/rqtl2/rqtl2-qc-job-error.html index 1650a79..524282b 100644 --- a/qc_app/templates/rqtl2/rqtl2-qc-job-error.html +++ b/qc_app/templates/rqtl2/rqtl2-qc-job-error.html @@ -90,6 +90,14 @@ {{errors_table("tbl-errors-pheno", errorspheno[0:50])}} {%endif%} +{%if errorsphenose | length > 0%} +<h2 class="heading">Phenose Errors ({{errorsphenose | length}})</h3> +<div class="explainer"> + We found the following errors in the 'phenose' file in your R/qtl2 bundle: +</div> +{{errors_table("tbl-errors-phenose", errorsphenose[0:50])}} +{%endif%} + {%if errorsphenocovar | length > 0%} <h2 class="heading">Phenocovar Errors ({{errorsphenocovar | length}})</h3> <div class="explainer"> diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py index c45952c..66b219d 100644 --- a/qc_app/upload/rqtl2.py +++ b/qc_app/upload/rqtl2.py @@ -211,6 +211,8 @@ def rqtl2_bundle_qc_status(jobid: UUID): thejob.get("errors-geno", "[]")), errorspheno=json.loads( thejob.get("errors-pheno", "[]")), + errorsphenose=json.loads( + thejob.get("errors-phenose", "[]")), errorsphenocovar=json.loads( thejob.get("errors-phenocovar", "[]")), messages=logmessages) |