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authorFrederick Muriuki Muriithi2024-01-08 05:53:18 +0300
committerFrederick Muriuki Muriithi2024-01-08 05:53:18 +0300
commitea89a07e6d04c2fe58f94839eb9916b365b2f3f2 (patch)
treec51d3e7c470559a8a3034aa234159a279b00f89b /qc_app/upload
parentcfe64eb35b6e24b4ca127cba30ecccd465051d1f (diff)
downloadgn-uploader-ea89a07e6d04c2fe58f94839eb9916b365b2f3f2.tar.gz
Implement "create-population" route.
Diffstat (limited to 'qc_app/upload')
-rw-r--r--qc_app/upload/rqtl2.py35
1 files changed, 34 insertions, 1 deletions
diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py
index f27f0bf..681e54c 100644
--- a/qc_app/upload/rqtl2.py
+++ b/qc_app/upload/rqtl2.py
@@ -13,6 +13,7 @@ from qc_app.dbinsert import species as all_species
from qc_app.db_utils import with_db_connection, database_connection
from qc_app.db import (
species_by_id,
+ save_population,
populations_by_species,
population_by_species_and_id)
@@ -62,4 +63,36 @@ def select_population(species_id: int):
species_id=species["SpeciesId"],
population_id=population["InbredSetId"]))
- return "WOULD PROCESS DATA"
+@rqtl2.route("/upload/species/<int:species_id>/create-population",
+ methods=["POST"])
+def create_population(species_id: int):
+ """Create a new population for the given species."""
+ population_page = redirect(url_for("upload.rqtl2.select_population"))
+ with database_connection(app.config["SQL_URI"]) as conn:
+ species = species_by_id(conn, species_id)
+ population_name = request.form.get("inbredset_name", "").strip()
+ population_fullname = request.form.get("inbredset_fullname", "").strip()
+ if not bool(species):
+ flash("Invalid species!", "alert-error error-rqtl2")
+ return redirect(url_for("upload.rqtl2.select_species"))
+ if not bool(population_name):
+ flash("Invalid Population Name!", "alert-error error-rqtl2")
+ return population_page
+ if not bool(population_fullname):
+ flash("Invalid Population Full Name!", "alert-error error-rqtl2")
+ return population_page
+ new_population = save_population(conn, {
+ "SpeciesId": species["SpeciesId"],
+ "Name": population_name,
+ "InbredSetName": population_fullname,
+ "FullName": population_fullname,
+ "Family": request.form.get("inbredset_family") or None,
+ "Description": request.form.get("description") or None
+ })
+
+ flash("Population created successfully.", "alert-success")
+ return redirect(
+ url_for("upload.rqtl2.upload_rqtl2_bundle",
+ population_id=new_population["population_id"],
+ pgsrc="create-population"),
+ code=307)