Fix error display: setup correct error class

1 files changed, 30 insertions, 32 deletions

diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py
index 810e031..f36a3a6 100644
--- a/qc_app/upload/rqtl2.py
+++ b/qc_app/upload/rqtl2.py
@@ -60,7 +60,7 @@ def select_species():
     if bool(species):
         return redirect(url_for(
             "upload.rqtl2.select_population", species_id=species_id))
-    flash("Invalid species or no species selected!", "alert-error alert-rqtl2")
+    flash("Invalid species or no species selected!", "alert-error error-rqtl2")
     return redirect(url_for("upload.rqtl2.select_species"))
 
 @rqtl2.route("/upload/species/<int:species_id>/select-population",
@@ -70,7 +70,7 @@ def select_population(species_id: int):
     with database_connection(app.config["SQL_URI"]) as conn:
         species = species_by_id(conn, species_id)
         if not bool(species):
-            flash("Invalid species selected!", "alert-error alert-rqtl2")
+            flash("Invalid species selected!", "alert-error error-rqtl2")
             return redirect(url_for("upload.rqtl2.select_species"))
 
         if request.method == "GET":
@@ -82,7 +82,7 @@ def select_population(species_id: int):
         population = population_by_species_and_id(
             conn, species["SpeciesId"], request.form.get("inbredset_id"))
         if not bool(population):
-            flash("Invalid Population!", "alert-error alert-rqtl2")
+            flash("Invalid Population!", "alert-error error-rqtl2")
             return redirect(
                 url_for("upload.rqtl2.select_population", pgsrc="error"),
                 code=307)
@@ -102,13 +102,13 @@ def create_population(species_id: int):
         population_name = request.form.get("inbredset_name", "").strip()
         population_fullname = request.form.get("inbredset_fullname", "").strip()
         if not bool(species):
-            flash("Invalid species!", "alert-error alert-rqtl2")
+            flash("Invalid species!", "alert-error error-rqtl2")
             return redirect(url_for("upload.rqtl2.select_species"))
         if not bool(population_name):
-            flash("Invalid Population Name!", "alert-error alert-rqtl2")
+            flash("Invalid Population Name!", "alert-error error-rqtl2")
             return population_page
         if not bool(population_fullname):
-            flash("Invalid Population Full Name!", "alert-error alert-rqtl2")
+            flash("Invalid Population Full Name!", "alert-error error-rqtl2")
             return population_page
         new_population = save_population(conn, {
             "SpeciesId": species["SpeciesId"],
@@ -146,10 +146,10 @@ def upload_rqtl2_bundle(species_id: int, population_id: int):
         population = population_by_species_and_id(
             conn, species["SpeciesId"], population_id)
         if not bool(species):
-            flash("Invalid species!", "alert-error alert-rqtl2")
+            flash("Invalid species!", "alert-error error-rqtl2")
             return redirect(url_for("upload.rqtl2.select_species"))
         if not bool(population):
-            flash("Invalid Population!", "alert-error alert-rqtl2")
+            flash("Invalid Population!", "alert-error error-rqtl2")
             return redirect(
                 url_for("upload.rqtl2.select_population", pgsrc="error"),
                 code=307)
@@ -180,7 +180,7 @@ def upload_rqtl2_bundle(species_id: int, population_id: int):
                     population=population,
                     rqtl2_bundle_file=the_file.name)#type: ignore[union-attr]
         except (InvalidFormat, __RequestError__) as exc:
-            flash("".join(exc.args), "alert-error alert-rqtl2")
+            flash("".join(exc.args), "alert-error error-rqtl2")
             return this_page_with_errors
 
 def check_errors(conn, *args, **kwargs):#pylint: disable=[too-many-return-statements]
@@ -192,18 +192,18 @@ def check_errors(conn, *args, **kwargs):#pylint: disable=[too-many-return-statem
     population = population_by_species_and_id(conn, species_id, population_id)
 
     if "species" in args and not bool(species):
-        flash("Invalid species!", "alert-error alert-rqtl2")
+        flash("Invalid species!", "alert-error error-rqtl2")
         return redirect(url_for("upload.rqtl2.select_species"))
 
     if "population" in args and not bool(population):
-        flash("Invalid Population!", "alert-error alert-rqtl2")
+        flash("Invalid Population!", "alert-error error-rqtl2")
         return redirect(
             url_for("upload.rqtl2.select_population", pgsrc="error"),
             code=307)
 
     if ("rqtl2_bundle_file" in args
         and not bool(request.form.get("rqtl2_bundle_file"))):
-        flash("There is no file to process.", "alert-error alert-rqtl2")
+        flash("There is no file to process.", "alert-error error-rqtl2")
         return redirect(url_for("upload.rqtl2.upload_rqtl2_bundle",
                                 species_id=species_id,
                                 population_id=population_id,
@@ -212,7 +212,7 @@ def check_errors(conn, *args, **kwargs):#pylint: disable=[too-many-return-statem
 
     if ("geno-dataset" in args and
         not bool(request.form.get("geno-dataset-id"))):
-        flash("No genotype dataset was provided!", "alert-error alert-rqtl2")
+        flash("No genotype dataset was provided!", "alert-error error-rqtl2")
         return redirect(url_for("upload.rqtl2.select_geno_dataset",
                                 species_id=species_id,
                                 population_id=population_id,
@@ -227,12 +227,12 @@ def check_errors(conn, *args, **kwargs):#pylint: disable=[too-many-return-statem
 
     if ("probe-study-id" in args and
         not bool(request.form.get("probe-study-id"))):
-        flash("No probeset study was selected!", "alert-error alert-rqtl2")
+        flash("No probeset study was selected!", "alert-error error-rqtl2")
         return summary_page
 
     if ("probe-dataset-id" in args and
         not bool(request.form.get("probe-dataset-id"))):
-        flash("No probeset dataset was selected!", "alert-error alert-rqtl2")
+        flash("No probeset dataset was selected!", "alert-error error-rqtl2")
         return summary_page
 
     return None
@@ -252,14 +252,14 @@ def select_geno_dataset(species_id: int, population_id: int):
             conn, species_id, population_id)
         if not bool(geno_dset):
             flash("No genotype dataset was provided!",
-                  "alert-error alert-rqtl2")
+                  "alert-error error-rqtl2")
             return redirect(url_for("upload.rqtl2.select_geno_dataset",
                                     species_id=species_id,
                                     population_id=population_id,
                                     pgsrc="error"),
                             code=307)
 
-        flash("Genotype accepted", "alert-success alert-rqtl2")
+        flash("Genotype accepted", "alert-success error-rqtl2")
         return redirect(url_for("upload.rqtl2.select_dataset_info",
                                 species_id=species_id,
                                 population_id=population_id,
@@ -281,17 +281,15 @@ def create_geno_dataset(species_id: int, population_id: int):
                                       population_id=population_id,
                                       pgsrc="error"),
                               code=307)
+        errorclasses = "alert-error error-rqtl2 error-rqtl2-create-geno-dataset"
         if not bool(request.form.get("dataset-name")):
-            flash("You must provide the dataset name",
-                  "alert-error alert-rqtl2")
+            flash("You must provide the dataset name", errorclasses)
             return sgeno_page
         if not bool(request.form.get("dataset-fullname")):
-            flash("You must provide the dataset full name",
-                  "alert-error alert-rqtl2")
+            flash("You must provide the dataset full name", errorclasses)
             return sgeno_page
         if not bool(request.form.get("dataset-shortname")):
-            flash("You must provide the dataset short name",
-                  "alert-error alert-rqtl2")
+            flash("You must provide the dataset short name", errorclasses)
             return sgeno_page
         public = 2 if request.form.get("dataset-public") == "on" else 0
 
@@ -338,7 +336,7 @@ def select_probeset_study(species_id: int, population_id: int):
                                         population_id=population_id),
                                 code=307)
         if not bool(probeset_study_by_id(conn, int(request.form["probe-study-id"]))):
-            flash("Invalid study selected!", "alert-error alert-rqtl2")
+            flash("Invalid study selected!", "alert-error error-rqtl2")
             return summary_page
 
         return summary_page
@@ -360,7 +358,7 @@ def select_probeset_dataset(species_id: int, population_id: int):
                                         population_id=population_id),
                                 code=307)
         if not bool(probeset_study_by_id(conn, int(request.form["probe-study-id"]))):
-            flash("Invalid study selected!", "alert-error alert-rqtl2")
+            flash("Invalid study selected!", "alert-error error-rqtl2")
             return summary_page
 
         return summary_page
@@ -385,12 +383,12 @@ def create_probeset_study(species_id: int, population_id: int):
 
         if not (bool(form.get("platformid")) and
                 bool(platform_by_id(conn, int(form["platformid"])))):
-            flash("Invalid platform selected.", "alert-error alert-rqtl2")
+            flash("Invalid platform selected.", "alert-error error-rqtl2")
             return select_study_page
 
         if not (bool(form.get("tissueid")) and
                 bool(tissue_by_id(conn, int(form["tissueid"])))):
-            flash("Invalid tissue selected.", "alert-error alert-rqtl2")
+            flash("Invalid tissue selected.", "alert-error error-rqtl2")
             return select_study_page
 
         study = probeset_create_study(
@@ -426,23 +424,23 @@ def create_probeset_dataset(species_id: int, population_id: int):#pylint: disabl
                                         population_id=population_id),
                                 code=307)
         if not bool(form.get("averageid")):
-            flash("Averaging method not selected!", "alert-error alert-rqtl2")
+            flash("Averaging method not selected!", "alert-error error-rqtl2")
             return summary_page
         if not bool(form.get("datasetname")):
-            flash("Dataset name not provided!", "alert-error alert-rqtl2")
+            flash("Dataset name not provided!", "alert-error error-rqtl2")
             return summary_page
         if not bool(form.get("datasetfullname")):
-            flash("Dataset full name not provided!", "alert-error alert-rqtl2")
+            flash("Dataset full name not provided!", "alert-error error-rqtl2")
             return summary_page
 
         study = probeset_study_by_id(conn, int(form["probe-study-id"]))
         if not bool(study):
-            flash("Invalid ProbeSet study provided!", "alert-error alert-rqtl2")
+            flash("Invalid ProbeSet study provided!", "alert-error error-rqtl2")
             return summary_page
 
         avgmethod = averaging_method_by_id(conn, int(form["averageid"]))
         if not bool(avgmethod):
-            flash("Invalid averaging method provided!", "alert-error alert-rqtl2")
+            flash("Invalid averaging method provided!", "alert-error error-rqtl2")
             return summary_page
 
         dset = probeset_create_dataset(conn,