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author | Frederick Muriuki Muriithi | 2024-01-05 13:08:38 +0300 |
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committer | Frederick Muriuki Muriithi | 2024-01-05 13:10:56 +0300 |
commit | 58a214a4a9be5fb219a798b62cdbf43d72280c74 (patch) | |
tree | 1ab9beaa142a4887e44aa6fe09e1206a959b024a /qc_app/upload | |
parent | 6200a60eb6f04a5d50bfe0ad366674dc49a08119 (diff) | |
download | gn-uploader-58a214a4a9be5fb219a798b62cdbf43d72280c74.tar.gz |
Initialise R/qtl2 bundle upload path
Initialise the upload path for R/qtl2 bundles. This commit adds UI
that allows the user to select from existing species, before
proceeding to the next stage.
Diffstat (limited to 'qc_app/upload')
-rw-r--r-- | qc_app/upload/__init__.py | 7 | ||||
-rw-r--r-- | qc_app/upload/rqtl2.py | 31 |
2 files changed, 38 insertions, 0 deletions
diff --git a/qc_app/upload/__init__.py b/qc_app/upload/__init__.py new file mode 100644 index 0000000..5f120d4 --- /dev/null +++ b/qc_app/upload/__init__.py @@ -0,0 +1,7 @@ +"""Package handling upload of files.""" +from flask import Blueprint + +from .rqtl2 import rqtl2 + +upload = Blueprint("upload", __name__) +upload.register_blueprint(rqtl2, url_prefix="/rqtl2") diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py new file mode 100644 index 0000000..e54f141 --- /dev/null +++ b/qc_app/upload/rqtl2.py @@ -0,0 +1,31 @@ +"""Module to handle uploading of R/qtl2 bundles.""" + +from flask import ( + flash, + request, + url_for, + redirect, + Blueprint, + render_template) + +from qc_app.dbinsert import species as all_species +from qc_app.dbinsert import species_by_id, groups_by_species +from qc_app.db_utils import with_db_connection + +rqtl2 = Blueprint("rqtl2", __name__) + +@rqtl2.route("/", methods=["GET", "POST"]) +@rqtl2.route("/select-species", methods=["POST"]) +def select_species(): + """Select the species.""" + if request.method == "GET": + return render_template("rqtl2/index.html", species=all_species()) + + species_id = request.form.get("species_id") + species = with_db_connection( + lambda conn: species_by_id(conn, species_id)) + if bool(species): + return redirect(url_for( + "upload.rqtl2.select_population", species_id=species_id)) + flash("Invalid species or no species selected!", "alert-error error-rqtl2") + return redirect(url_for("upload.rqtl2.select_species")) |