UI: Show progress of R/qtl2 bundle processing.

1 files changed, 24 insertions, 2 deletions

diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py
index 7ba90c2..8a0d8b4 100644
--- a/qc_app/upload/rqtl2.py
+++ b/qc_app/upload/rqtl2.py
@@ -1,9 +1,9 @@
 """Module to handle uploading of R/qtl2 bundles."""
 import sys
 import json
-from uuid import uuid4
 from pathlib import Path
 from datetime import date
+from uuid import UUID, uuid4
 from zipfile import ZipFile, is_zipfile
 
 from redis import Redis
@@ -581,4 +581,26 @@ def confirm_bundle_details(species_id: int, population_id: int):
             redisuri,
             f"{app.config['UPLOAD_FOLDER']}/job_errors")
 
-        raise NotImplementedError
+        return redirect(url_for("upload.rqtl2.rqtl2_processing_status",
+                                jobid=jobid))
+
+@rqtl2.route("/status/<uuid:jobid>")
+def rqtl2_processing_status(jobid: UUID):
+    """Retrieve the status of the job processing the uploaded R/qtl2 bundle."""
+    with Redis.from_url(app.config["REDIS_URL"], decode_responses=True) as rconn:
+        thejob = jobs.job(rconn, jobid)
+        if not bool(thejob):
+            return render_template("rqtl2/no-such-job.html", jobid=jobid)
+
+        logmessages = rconn.lrange(thejob.get("log-messagelist"), 0, -1) or []
+
+        if thejob["status"] == "error":
+            return render_template(
+                "rqtl2/rqtl2-job-error.html", job=thejob, messages=logmessages)
+        if thejob["status"] == "success":
+            return render_template("rqtl2/rqtl2-job-results.html",
+                                   job=thejob,
+                                   messages=logmessages)
+
+        return render_template(
+            "rqtl2/rqtl2-job-status.html", job=thejob, messages=logmessages)