UI: Display summary information.

1 files changed, 24 insertions, 1 deletions

diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py
index 0b446ac..7609fa9 100644
--- a/qc_app/upload/rqtl2.py
+++ b/qc_app/upload/rqtl2.py
@@ -34,6 +34,7 @@ from qc_app.db.datasets import (
 
     probeset_study_by_id,
     probeset_create_study,
+    probeset_dataset_by_id,
     probeset_create_dataset,
     probeset_datasets_by_study,
     probeset_studies_by_species_and_population)
@@ -512,8 +513,30 @@ def select_dataset_info(species_id: int, population_id: int):
                     datasets=probeset_datasets_by_study(
                         conn, int(form["probe-study-id"])),
                     avgmethods=averaging_methods(conn))
+            probeset_study = probeset_study_by_id(
+                conn, int(form["probe-study-id"]))
+            probeset_dataset = probeset_dataset_by_id(
+                conn, int(form["probe-dataset-id"]))
 
     return render_template("rqtl2/summary-info.html",
                            species=species,
                            population=population,
-                           geno_dataset=geno_dataset)
+                           geno_dataset=geno_dataset,
+                           probe_study=probeset_study,
+                           probe_dataset=probeset_dataset)
+
+
+
+@rqtl2.route(("/upload/species/<int:species_id>/population/<int:population_id>"
+              "/rqtl2-bundle/confirm-bundle-details"),
+             methods=["POST"])
+def confirm_bundle_details(species_id: int, population_id: int):
+    """Confirm the details and trigger R/qtl2 bundle processing..."""
+    with database_connection(app.config["SQL_URI"]) as conn:
+        error = check_errors(
+            conn, "species", "population", "rqtl2_bundle_file", "geno-dataset",
+            "probe-study-id", "probe-dataset-id")
+        if bool(error):
+            return error
+
+        raise NotImplementedError