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| author | Frederick Muriuki Muriithi | 2024-07-01 12:38:01 -0500 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-07-01 12:38:01 -0500 |
| commit | 0e74a1589db9f367cdbc3dce232b1b6168e3aca1 (patch) | |
| tree | 1988790891e8d6fe4630dd4d79a85a7e8917b1f9 /qc_app/upload/rqtl2.py | |
| parent | a4255e01599f7bb0dd4b5d5fb7361d8271d9d86d (diff) | |
| download | gn-uploader-0e74a1589db9f367cdbc3dce232b1b6168e3aca1.tar.gz | |
Check for genotype samples in the database
Check for genotype samples in both the R/qtl2 file and in the
database.
Diffstat (limited to 'qc_app/upload/rqtl2.py')
| -rw-r--r-- | qc_app/upload/rqtl2.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py index 4ff7ba3..31d5a9d 100644 --- a/qc_app/upload/rqtl2.py +++ b/qc_app/upload/rqtl2.py @@ -207,7 +207,8 @@ def trigger_rqtl2_bundle_qc( str(jobid), [sys.executable, "-m", "scripts.qc_on_rqtl2_bundle", app.config["SQL_URI"], app.config["REDIS_URL"], - jobs.jobsnamespace(), str(jobid), "--redisexpiry", + jobs.jobsnamespace(), str(jobid), str(species_id), + str(population_id), "--redisexpiry", str(redis_ttl_seconds)], "rqtl2-bundle-qc-job", redis_ttl_seconds, |