UI: Create UI to select from existing genotype datasets.

2 files changed, 91 insertions, 0 deletions

diff --git a/qc_app/templates/rqtl2/select-geno-dataset.html b/qc_app/templates/rqtl2/select-geno-dataset.html
new file mode 100644
index 0000000..c8623b3
--- /dev/null
+++ b/qc_app/templates/rqtl2/select-geno-dataset.html
@@ -0,0 +1,55 @@
+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Upload R/qtl2 Bundle{%endblock%}
+
+{%block contents%}
+<h2 class="heading">Select Genotypes Dataset</h2>
+
+<div class="explainer">
+  <p>Your R/qtl2 files bundle contains a "geno" specification. You will
+    therefore need to select from one of the existing Genotype datasets or
+    create a new one.</p>
+  <p>This is the dataset where your data will be organised under.</p>
+</div>
+
+<form id="frm-upload-rqtl2-bundle"
+      action="{{url_for('upload.rqtl2.select_geno_dataset',
+	      species_id=species.SpeciesId,
+	      population_id=population.InbredSetId)}}"
+      method="POST"
+      enctype="multipart/form-data">
+  <legend class="heading">select from existing genotype datasets</legend>
+
+  <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+  <input type="hidden" name="population_id"
+	 value="{{population.InbredSetId}}" />
+  <input type="hidden" name="rqtl2_bundle_file"
+	 value="{{rqtl2_bundle_file}}" />
+
+  {{flash_messages("error-rqtl2")}}
+
+  <fieldset>
+    <legend>Datasets</legend>
+    <label for="select:geno-datasets">Dataset</label>
+    <select id="select:geno-datasets"
+	    name="geno-datasets"
+	    required="required"
+	    {%if datasets | length == 0%}
+	    disabled="disabled"
+	    {%endif%}>
+      <option value="">Select dataset</option>
+      {%for dset in datasets%}
+      <option value="{{dset['Id']}}">{{dset["Name"]}} ({{dset["FullName"]}})</option>
+      {%endfor%}
+    </select>
+  </fieldset>
+
+  <fieldset>
+    <input type="submit"
+	   value="select dataset"
+	   class="btn btn-main form-col-2" />
+  </fieldset>
+</form>
+
+{%endblock%}
diff --git a/qc_app/templates/rqtl2/upload-rqtl2-bundle-step-02.html b/qc_app/templates/rqtl2/upload-rqtl2-bundle-step-02.html
new file mode 100644
index 0000000..9269a3c
--- /dev/null
+++ b/qc_app/templates/rqtl2/upload-rqtl2-bundle-step-02.html
@@ -0,0 +1,36 @@
+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Upload R/qtl2 Bundle{%endblock%}
+
+{%block contents%}
+<h2 class="heading">Upload R/qtl2 Bundle</h2>
+
+<div class="explainer">
+  <p>You have successfully uploaded the zipped bundle of R/qtl2 files.</p>
+  <p>The next step is to select the various extra information we need to figure
+    out what to do with the data. You will select/create the relevant studies
+    and/or datasets to organise the data in the steps that follow.</p>
+  <p>Click "Continue" below to proceed.</p>
+</div>
+
+<form id="frm-upload-rqtl2-bundle"
+      action="{{url_for('upload.rqtl2.select_dataset_info',
+	      species_id=species.SpeciesId,
+	      population_id=population.InbredSetId)}}"
+      method="POST"
+      enctype="multipart/form-data">
+  <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+  <input type="hidden" name="population_id"
+	 value="{{population.InbredSetId}}" />
+  <input type="hidden" name="rqtl2_bundle_file"
+	 value="{{rqtl2_bundle_file}}" />
+
+  {{flash_messages("error-rqtl2")}}
+
+  <fieldset>
+    <input type="submit" value="continue" class="btn btn-main form-col-2" />
+  </fieldset>
+</form>
+
+{%endblock%}