Rename module: qc_app --> uploader

1 files changed, 0 insertions, 143 deletions

diff --git a/qc_app/templates/rqtl2/select-probeset-study-id.html b/qc_app/templates/rqtl2/select-probeset-study-id.html
deleted file mode 100644
index b9bf52e..0000000
--- a/qc_app/templates/rqtl2/select-probeset-study-id.html
+++ /dev/null
@@ -1,143 +0,0 @@
-{%extends "base.html"%}
-{%from "flash_messages.html" import flash_messages %}
-
-{%block title%}Upload R/qtl2 Bundle{%endblock%}
-
-{%block contents%}
-<h2 class="heading">Phenotype(ProbeSet) Study</h2>
-
-<div class="row">
-  <p>The R/qtl2 bundle you uploaded contains (a) "<strong>pheno</strong>"
-    file(s). This data needs to be organised under a study.</p>
-  <p>In this page, you can either select from a existing dataset:</p>
-
-  <form method="POST"
-        action="{{url_for('upload.rqtl2.select_probeset_study',
-	        species_id=species.SpeciesId, population_id=population.Id)}}"
-        id="frm:select-probeset-study">
-    <legend class="heading">Select from existing ProbeSet studies</legend>
-    {{flash_messages("error-rqtl2-select-probeset-study")}}
-
-    <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
-    <input type="hidden" name="population_id"
-	   value="{{population.InbredSetId}}" />
-    <input type="hidden" name="rqtl2_bundle_file"
-	   value="{{rqtl2_bundle_file}}" />
-    <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
-    <input type="hidden" name="tissueid" value="{{tissue.Id}}" />
-
-    <div>
-      <label for="select:probe-study" class="form-label">Study</label>
-      <select id="select:probe-study"
-	      name="probe-study-id"
-	      required="required"
-              aria-describedby="help-select-probeset-study"
-	      {%if studies | length == 0%}disabled="disabled"{%endif%}
-              class="form-control">
-        <option value="">Select a study</option>
-        {%for study in studies%}
-        <option value={{study.Id}}>
-	  {{study.Name}}
-	  {%if study.FullName%}
-	  -- ({{study.FullName}})
-	  {%endif%}
-        </option>
-        {%endfor%}
-      </select>
-      <small id="help-select-probeset-study" class="form-text text-muted">
-        Select from existing ProbeSet studies.
-      </small>
-    </div>
-
-    <button type="submit" class="btn btn-primary">select study</button>
-  </form>
-</div>
-
-<div class="row">
-  <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
-</div>
-
-<div class="row">
-
-  <p>Create a new ProbeSet dataset below:</p>
-
-  <form method="POST"
-        action="{{url_for('upload.rqtl2.create_probeset_study',
-	        species_id=species.SpeciesId, population_id=population.Id)}}"
-        id="frm:create-probeset-study">
-    <legend class="heading">Create new ProbeSet study</legend>
-
-    {{flash_messages("error-rqtl2-create-probeset-study")}}
-
-    <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
-    <input type="hidden" name="population_id"
-	   value="{{population.InbredSetId}}" />
-    <input type="hidden" name="rqtl2_bundle_file"
-	   value="{{rqtl2_bundle_file}}" />
-    <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
-    <input type="hidden" name="tissueid" value="{{tissue.Id}}" />
-
-    <div>
-      <label for="select:platform" class="form-label">Platform</label>
-      <select id="select:platform"
-	      name="platformid"
-	      required="required"
-              aria-describedby="help-select-platform"
-	      {%if platforms | length == 0%}disabled="disabled"{%endif%}
-              class="form-control">
-        <option value="">Select a platform</option>
-        {%for platform in platforms%}
-        <option value="{{platform.GeneChipId}}">
-	  {{platform.GeneChipName}} ({{platform.Name}})
-        </option>
-        {%endfor%}
-      </select>
-      <small id="help-select-platform" class="form-text text-muted">
-        Select from a list of known genomics platforms.
-      </small>
-    </div>
-
-    <div class="form-group">
-      <label for="txt:studyname" class="form-label">Study name</label>
-      <input type="text" id="txt:studyname" name="studyname"
-	     placeholder="Name of the study. (Required)"
-	     required="required"
-	     maxlength="100"
-             class="form-control" />
-      <span class="form-text text-muted" id="help-study-name">
-        Provide a name for the study.</span>
-    </div>
-
-    <div class="form-group">
-      <label for="txt:studyfullname" class="form-label">Full Study Name</label>
-      <input type="text"
-             id="txt:studyfullname"
-             name="studyfullname"
-	     placeholder="Longer name of the study. (Optional)"
-	     maxlength="100"
-             class="form-control" />
-      <span class="form-text text-muted" id="help-study-full-name">
-        Provide a longer, more descriptive name for the study. This is optional
-        and you can leave it blank.
-      </span>
-    </div>
-
-    <div class="form-group">
-      <label for="txt:studyshortname" class="form-label">Short Study Name</label>
-      <input type="text"
-             id="txt:studyshortname"
-             name="studyshortname"
-	     placeholder="Shorter name of the study. (Optional)"
-	     maxlength="100"
-             class="form-control" />
-      <span class="form-text text-muted" id="help-study-short-name">
-        Provide a shorter name for the study. This is optional and you can leave
-        it blank.
-      </span>
-    </div>
-
-    <button type="submit" class="btn btn-primary">create study</button>
-  </form>
-</div>
-
-{%endblock%}