Rename module: qc_app --> uploader

1 files changed, 0 insertions, 144 deletions

diff --git a/qc_app/templates/rqtl2/select-geno-dataset.html b/qc_app/templates/rqtl2/select-geno-dataset.html
deleted file mode 100644
index 873f9c3..0000000
--- a/qc_app/templates/rqtl2/select-geno-dataset.html
+++ /dev/null
@@ -1,144 +0,0 @@
-{%extends "base.html"%}
-{%from "flash_messages.html" import flash_messages%}
-
-{%block title%}Upload R/qtl2 Bundle{%endblock%}
-
-{%block contents%}
-<h2 class="heading">Select Genotypes Dataset</h2>
-
-<div class="row">
-  <p>Your R/qtl2 files bundle contains a "geno" specification. You will
-    therefore need to select from one of the existing Genotype datasets or
-    create a new one.</p>
-  <p>This is the dataset where your data will be organised under.</p>
-</div>
-
-<div class="row">
-  <form id="frm-upload-rqtl2-bundle"
-        action="{{url_for('upload.rqtl2.select_geno_dataset',
-	        species_id=species.SpeciesId,
-	        population_id=population.InbredSetId)}}"
-        method="POST"
-        enctype="multipart/form-data">
-    <legend class="heading">select from existing genotype datasets</legend>
-
-    <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
-    <input type="hidden" name="population_id"
-	   value="{{population.InbredSetId}}" />
-    <input type="hidden" name="rqtl2_bundle_file"
-	   value="{{rqtl2_bundle_file}}" />
-
-    {{flash_messages("error-rqtl2-select-geno-dataset")}}
-
-    <div class="form-group">
-      <legend>Datasets</legend>
-      <label for="select:geno-datasets" class="form-label">Dataset</label>
-      <select id="select:geno-datasets"
-	      name="geno-dataset-id"
-	      required="required"
-	      {%if datasets | length == 0%}
-	      disabled="disabled"
-	      {%endif%}
-              class="form-control"
-              aria-describedby="help-geno-dataset-select-dataset">
-        <option value="">Select dataset</option>
-        {%for dset in datasets%}
-        <option value="{{dset['Id']}}">{{dset["Name"]}} ({{dset["FullName"]}})</option>
-        {%endfor%}
-      </select>
-      <span id="help-geno-dataset-select-dataset" class="form-text text-muted">
-        Select from the existing genotype datasets for species
-        {{species.SpeciesName}} ({{species.FullName}}).
-      </span>
-    </div>
-
-    <button type="submit" class="btn btn-primary">select dataset</button>
-  </form>
-</div>
-
-<div class="row">
-  <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
-</div>
-
-<div class="row">
-  <form id="frm-upload-rqtl2-bundle"
-        action="{{url_for('upload.rqtl2.create_geno_dataset',
-	        species_id=species.SpeciesId,
-	        population_id=population.InbredSetId)}}"
-        method="POST"
-        enctype="multipart/form-data">
-    <legend class="heading">create a new genotype dataset</legend>
-
-    <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
-    <input type="hidden" name="population_id"
-	   value="{{population.InbredSetId}}" />
-    <input type="hidden" name="rqtl2_bundle_file"
-	   value="{{rqtl2_bundle_file}}" />
-
-    {{flash_messages("error-rqtl2-create-geno-dataset")}}
-
-    <div class="form-group">
-      <label for="txt:dataset-name" class="form-label">Name</label>
-      <input type="text"
-	     id="txt:dataset-name"
-	     name="dataset-name"
-	     maxlength="100"
-	     required="required"
-             class="form-control"
-             aria-describedby="help-geno-dataset-name" />
-      <span id="help-geno-dataset-name" class="form-text text-muted">
-        Provide the new name for the genotype dataset, e.g. "BXDGeno"
-      </span>
-    </div>
-
-    <div class="form-group">
-      <label for="txt:dataset-fullname" class="form-label">Full Name</label>
-      <input type="text"
-	     id="txt:dataset-fullname"
-	     name="dataset-fullname"
-	     required="required"
-	     maxlength="100"
-             class="form-control"
-             aria-describedby="help-geno-dataset-fullname" />
-
-      <span id="help-geno-dataset-fullname" class="form-text text-muted">
-        Provide a longer name that better describes the genotype dataset, e.g.
-        "BXD Genotypes"
-      </span>
-    </div>
-
-    <div class="form-group">
-      <label for="txt:dataset-shortname" class="form-label">Short Name</label>
-      <input type="text"
-	     id="txt:dataset-shortname"
-	     name="dataset-shortname"
-	     maxlength="100"
-             class="form-control"
-             aria-describedby="help-geno-dataset-shortname" />
-
-      <span id="help-geno-dataset-shortname" class="form-text text-muted">
-        Provide a short name for the genotype dataset. This is optional. If not
-        provided, we'll default to the same value as the "Name" above.
-      </span>
-    </div>
-
-    <div class="form-group">
-      <input type="checkbox"
-	     id="chk:dataset-public"
-	     name="dataset-public"
-	     checked="checked"
-             class="form-check"
-             aria-describedby="help-geno-datasent-public" />
-      <label for="chk:dataset-public" class="form-check-label">Public?</label>
-
-      <span id="help-geno-dataset-public" class="form-text text-muted">
-        Specify whether the dataset will be available publicly. Check to make the
-        dataset publicly available and uncheck to limit who can access the dataset.
-      </span>
-    </div>
-
-    <button type="submit" class="btn btn-primary">create new dataset</button>
-  </form>
-</div>
-
-{%endblock%}