Fix linting and type errors

1 files changed, 6 insertions, 15 deletions

diff --git a/qc_app/parse.py b/qc_app/parse.py
index b2a0156..e72a163 100644
--- a/qc_app/parse.py
+++ b/qc_app/parse.py
@@ -1,23 +1,13 @@
 """File parsing module"""
 import os
-from functools import reduce
 
 import jsonpickle
 from redis import Redis
-from flask import (
-    flash,
-    request,
-    url_for,
-    redirect,
-    Blueprint,
-    render_template,
-    current_app as app)
+from flask import flash, request, url_for, redirect, Blueprint, render_template
+from flask import current_app as app
 
-from . import jobs
 from quality_control.errors import InvalidValue
-from quality_control.parsing import (
-    FileType,
-    strain_names)
+from . import jobs
 
 parsebp = Blueprint("parse", __name__)
 isinvalidvalue = lambda item: isinstance(item, InvalidValue)
@@ -25,7 +15,6 @@ isinvalidvalue = lambda item: isinstance(item, InvalidValue)
 @parsebp.route("/parse", methods=["GET"])
 def parse():
     """Trigger file parsing"""
-    # TODO: Maybe implement external process to parse the files
     errors = False
     filename = request.args.get("filename")
     filetype = request.args.get("filetype")
@@ -59,6 +48,7 @@ def parse():
 
 @parsebp.route("/status/<job_id>", methods=["GET"])
 def parse_status(job_id: str):
+    "Retrieve the status of the job"
     with Redis.from_url(app.config["REDIS_URL"], decode_responses=True) as rconn:
         job = jobs.job(rconn, job_id)
 
@@ -76,7 +66,7 @@ def parse_status(job_id: str):
         filename = job.get("filename", "uploaded file")
         errors = jsonpickle.decode(
             job.get("errors", jsonpickle.encode(tuple())))
-        if status == "success" or status == "aborted":
+        if status in ("success", "aborted"):
             return redirect(url_for("parse.results", job_id=job_id))
 
         if status == "parse-error":
@@ -133,6 +123,7 @@ def fail(job_id: str):
 
 @parsebp.route("/abort", methods=["POST"])
 def abort():
+    """Handle user request to abort file processing"""
     job_id = request.form["job_id"]
 
     with Redis.from_url(app.config["REDIS_URL"], decode_responses=True) as rconn: