Extract common database functions into a separate package.

1 files changed, 0 insertions, 33 deletions

diff --git a/qc_app/dbinsert.py b/qc_app/dbinsert.py
index 2282c8d..881c913 100644
--- a/qc_app/dbinsert.py
+++ b/qc_app/dbinsert.py
@@ -5,7 +5,6 @@ from typing import Union
 from functools import reduce
 from datetime import datetime
 
-import MySQLdb as mdb
 from redis import Redis
 from MySQLdb.cursors import DictCursor
 from flask import (
@@ -31,28 +30,6 @@ def make_menu_items_grouper(grouping_fn=lambda item: item):
         return {**acc, grouping: (acc[grouping] + (row_values,))}
     return __grouper__
 
-def species() -> tuple:
-    "Retrieve the species from the database."
-    with database_connection() as conn:
-        with conn.cursor(cursorclass=DictCursor) as cursor:
-            cursor.execute(
-                "SELECT SpeciesId, SpeciesName, LOWER(Name) AS Name, MenuName "
-                "FROM Species")
-            return tuple(cursor.fetchall())
-
-    return tuple()
-
-def species_by_id(conn: mdb.Connection, speciesid) -> Union[dict, None]:
-    "Retrieve the species from the database by id."
-    with conn.cursor(cursorclass=DictCursor) as cursor:
-        cursor.execute(
-            (
-                "SELECT "
-                "SpeciesId, SpeciesName, LOWER(Name) AS Name, MenuName "
-                "FROM Species WHERE SpeciesId=%s"),
-            (speciesid,))
-        return cursor.fetchone()
-
 def genechips():
     "Retrieve the genechip information from the database"
     def __organise_by_species__(acc, chip):
@@ -94,16 +71,6 @@ def studies_by_species_and_platform(speciesid:int, genechipid:int) -> tuple:
 
     return tuple()
 
-def groups_by_species(speciesid:int) -> tuple:
-    "Retrieve group (InbredSet) information from the database."
-    with database_connection() as conn:
-        with conn.cursor(cursorclass=DictCursor) as cursor:
-            query = "SELECT * FROM InbredSet WHERE SpeciesId=%s"
-            cursor.execute(query, (speciesid,))
-            return tuple(cursor.fetchall())
-
-    return tuple()
-
 def organise_groups_by_family(acc:dict, group:dict) -> dict:
     "Organise the group (InbredSet) information by the group field"
     family = group["Family"]