Rename module: qc_app --> uploader

1 files changed, 0 insertions, 50 deletions

diff --git a/qc_app/db/tissues.py b/qc_app/db/tissues.py
deleted file mode 100644
index 9fe7bab..0000000
--- a/qc_app/db/tissues.py
+++ /dev/null
@@ -1,50 +0,0 @@
-"""Handle db interactions for tissue."""
-from typing import Union, Optional
-
-import MySQLdb as mdb
-from MySQLdb.cursors import DictCursor
-
-def all_tissues(conn: mdb.Connection) -> tuple[dict, ...]:
-    """All available tissue."""
-    with conn.cursor(cursorclass=DictCursor) as cursor:
-        cursor.execute("SELECT * FROM Tissue ORDER BY TissueName")
-        return tuple(dict(row) for row in cursor.fetchall())
-
-
-def tissue_by_id(conn: mdb.Connection, tissueid) -> Optional[dict]:
-    """Retrieve a tissue by its ID"""
-    with conn.cursor(cursorclass=DictCursor) as cursor:
-        cursor.execute("SELECT * FROM Tissue WHERE Id=%s", (tissueid,))
-        result = cursor.fetchone()
-        if bool(result):
-            return dict(result)
-
-    return None
-
-
-def create_new_tissue(
-        conn: mdb.Connection,
-        name: str,
-        shortname: str,
-        birnlexid: Optional[str] = None,
-        birnlexname: Optional[str] = None
-) -> dict[str, Union[int, str, None]]:
-    """Add a new tissue, organ or biological material to the database."""
-    with conn.cursor() as cursor:
-        cursor.execute(
-            "INSERT INTO "
-            "Tissue(TissueName, Name, Short_Name, BIRN_lex_ID, BIRN_lex_Name) "
-            "VALUES (%s, %s, %s, %s, %s)",
-            (name, name, shortname, birnlexid, birnlexname))
-        tissueid = cursor.lastrowid
-        cursor.execute("UPDATE Tissue SET TissueId=%s WHERE Id=%s",
-                       (tissueid, tissueid))
-        return {
-            "Id": tissueid,
-            "TissueId": tissueid,
-            "TissueName": name,
-            "Name": name,
-            "Short_Name": shortname,
-            "BIRN_lex_ID": birnlexid,
-            "BIRN_lex_Name": birnlexname
-        }