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| author | Frederick Muriuki Muriithi | 2023-10-16 14:44:25 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2023-10-16 14:44:25 +0300 |
| commit | 9e7c5761a1f9ba089ac700ee1a7a02d7c17683e1 (patch) | |
| tree | 3b8f566551f403d84ac76a92f13eb30401602519 | |
| parent | 88e051bd31c491ffead08d4d4951945063835ab6 (diff) | |
| download | gn-uploader-9e7c5761a1f9ba089ac700ee1a7a02d7c17683e1.tar.gz | |
Fix bug: Provide the platform_id to `insert_means`
| -rw-r--r-- | scripts/insert_data.py | 7 |
1 files changed, 4 insertions, 3 deletions
diff --git a/scripts/insert_data.py b/scripts/insert_data.py index f273c3a..7e27f93 100644 --- a/scripts/insert_data.py +++ b/scripts/insert_data.py @@ -126,8 +126,8 @@ def __format_query__(query, params): return f"{insert_str}\nVALUES\n\t{values_str};" def insert_means( - filepath: str, speciesid: int, datasetid: int, dbconn: mdb.Connection, - rconn: Redis) -> int: # pylint: disable=[unused-argument] + filepath: str, speciesid: int, platform_id: int, datasetid: int, + dbconn: mdb.Connection, rconn: Redis) -> int: # pylint: disable=[unused-argument] "Insert the means/averages data into the database" headings = read_file_headings(filepath) strains = strains_info(dbconn, headings[1:], speciesid) @@ -227,7 +227,8 @@ if __name__ == "__main__": extract_args = { "average": lambda args, dbconn, rconn: ( - args.filepath, args.speciesid, args.datasetid, dbconn, rconn), + args.filepath, args.speciesid, args.platformid, args.datasetid, dbconn, + rconn), "standard-error": lambda args, dbconn, rconn: ( args.filepath, args.speciesid, args.platformid, args.datasetid, dbconn, rconn), |