diff options
| author | Frederick Muriuki Muriithi | 2024-08-09 14:44:29 -0500 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-08-12 16:10:11 -0500 |
| commit | 71c4a871ff01f6b23ab6a5872f7fcf1a018ab86a (patch) | |
| tree | 47ed0aac8fa1762263217fac734917cf5525dfee | |
| parent | 321cb85283dc0a182e86d0ee509cae9ced4e39cd (diff) | |
| download | gn-uploader-71c4a871ff01f6b23ab6a5872f7fcf1a018ab86a.tar.gz | |
Define new InvalidValue error type.
Redesign the InvalidValue error type for the R/qtl2 bundles to list
the errors according to the row and column titles rather than line
numbers. This makes the error-reporting independent on whether or not
the file is transposed.
This will replace the use of the older
`quality_control.errors.InvalidValue` error type that depends on the
line and column numbers, and thus cannot work with transposable files.
| -rw-r--r-- | r_qtl/fileerrors.py | 9 |
1 files changed, 9 insertions, 0 deletions
diff --git a/r_qtl/fileerrors.py b/r_qtl/fileerrors.py index e76676c..c253d71 100644 --- a/r_qtl/fileerrors.py +++ b/r_qtl/fileerrors.py @@ -1,5 +1,14 @@ """QC errors as distinguished from actual exceptions""" from collections import namedtuple +InvalidValue = namedtuple( + "InvalidValue", + ("filename", + "rowtitle", + "coltitle", + "cellvalue", + "message")) + + MissingFile = namedtuple( "MissingFile", ("controlfilekey", "filename", "message")) |