aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorFrederick Muriuki Muriithi2024-04-05 13:51:29 +0300
committerFrederick Muriuki Muriithi2024-04-05 13:51:29 +0300
commit6c308016bf354c6f6e6dddc6d580e524fce2b91e (patch)
treeb2bc912e56b07414ca371d86149d07180f996f76
parent6c172fbaedcc40093db9874c067dd079678e4205 (diff)
downloadgn-uploader-6c308016bf354c6f6e6dddc6d580e524fce2b91e.tar.gz
Handle exceptions creating ProbeSet datasets.
-rw-r--r--qc_app/upload/rqtl2.py29
1 files changed, 21 insertions, 8 deletions
diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py
index 7a53756..60aeba7 100644
--- a/qc_app/upload/rqtl2.py
+++ b/qc_app/upload/rqtl2.py
@@ -656,14 +656,27 @@ def create_probeset_dataset(species_id: int, population_id: int):#pylint: disabl
flash("Invalid averaging method provided!", "alert-error error-rqtl2")
return summary_page
- dset = probeset_create_dataset(conn,
- int(form["probe-study-id"]),
- int(form["averageid"]),
- form["datasetname"],
- form["datasetfullname"],
- form["datasetshortname"],
- form["datasetpublic"] == "on",
- form.get("datasetdatascale", "log2"))
+ try:
+ dset = probeset_create_dataset(conn,
+ int(form["probe-study-id"]),
+ int(form["averageid"]),
+ form["datasetname"],
+ form["datasetfullname"],
+ form["datasetshortname"],
+ form["datasetpublic"] == "on",
+ form.get(
+ "datasetdatascale", "log2"))
+ except mdb.IntegrityError as _ierr:
+ flash(("A dataset with that name already exists. Try selecting "
+ "from list of datasets instead."),
+ "alert-error error-rqtl2")
+ return summary_page
+ except Exception as _exc:
+ app.logger.debug("Error creating ProbeSet dataset: %s",
+ traceback.format_exc())
+ flash(("There was a problem creating your dataset. Please try "
+ "again."),
+ "alert-error error-rqtl2")
return render_template(
"rqtl2/create-probe-dataset-success.html",
species=species_by_id(conn, species_id),