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authorFrederick Muriuki Muriithi2024-03-22 04:53:59 +0300
committerFrederick Muriuki Muriithi2024-03-22 04:53:59 +0300
commit3e48d8020029d6a98fcb056366d145277f22fc61 (patch)
tree13a7ea01865ebf2376e648aafa16525f45bc8efa
parent3958ce457f621f1b75fa8843ba859d8e6015a6c7 (diff)
downloadgn-uploader-3e48d8020029d6a98fcb056366d145277f22fc61.tar.gz
Fix linting issue.
-rw-r--r--scripts/insert_data.py18
1 files changed, 9 insertions, 9 deletions
diff --git a/scripts/insert_data.py b/scripts/insert_data.py
index 23ae108..efe81df 100644
--- a/scripts/insert_data.py
+++ b/scripts/insert_data.py
@@ -258,15 +258,15 @@ def insert_se(# pylint: disable = [too-many-arguments]
annotations = annotationinfo(dbconn, platformid, datasetid)
if not bool(annotations):
with dbconn.cursor(cursorclass=DictCursor) as cursor:
- dquery = cursor.execute((
- "SELECT "
- "gc.GeneChipName AS platformname, pf.Name AS studyname, "
- "psf.FullName AS datasetname "
- "FROM GeneChip AS gc INNER JOIN ProbeFreeze AS pf "
- "ON gc.Id=pf.ChipId INNER JOIN ProbeSetFreeze AS psf "
- "ON pf.Id=psf.ProbeFreezeId "
- "WHERE gc.Id=%s AND psf.Id=%s"),
- (platformid, datasetid))
+ cursor.execute(
+ ("SELECT "
+ "gc.GeneChipName AS platformname, pf.Name AS studyname, "
+ "psf.FullName AS datasetname "
+ "FROM GeneChip AS gc INNER JOIN ProbeFreeze AS pf "
+ "ON gc.Id=pf.ChipId INNER JOIN ProbeSetFreeze AS psf "
+ "ON pf.Id=psf.ProbeFreezeId "
+ "WHERE gc.Id=%s AND psf.Id=%s"),
+ (platformid, datasetid))
errorinfo = cursor.fetchone()
print(("ERROR: No annotations found for the "