Rename module

1 files changed, 46 insertions, 0 deletions

diff --git a/.guix/modules/gn-uploader.scm b/.guix/modules/gn-uploader.scm
new file mode 100644
index 0000000..4e198fa
--- /dev/null
+++ b/.guix/modules/gn-uploader.scm
@@ -0,0 +1,46 @@
+(define-module (gn-uploader)
+  #:use-module (guix gexp)
+  #:use-module (guix utils)
+  #:use-module (guix packages)
+  #:use-module (guix git-download)
+
+  #:use-module ((gnu packages check) #:select (python-pylint))
+  #:use-module ((gnu packages python-check) #:select (python-mypy))
+
+  #:use-module ((gn packages genenetwork) #:select (gn-uploader) #:prefix gn:))
+
+(define %source-dir (dirname (dirname (current-source-directory))))
+
+(define vcs-file?
+  (or (git-predicate %source-dir)
+      (const #t)))
+
+(define-public gn-uploader
+  (package
+    (inherit gn:gn-uploader)
+    (source
+     (local-file "../.."
+		 "gn-uploader-checkout"
+		 #:recursive? #t
+		 #:select? vcs-file?))))
+
+(define-public gn-uploader-all-tests
+  (package
+    (inherit gn-uploader)
+    (arguments
+     (substitute-keyword-arguments (package-arguments gn-uploader)
+       ((#:phases #~%standard-phases)
+	#~(modify-phases #$phases
+	    (add-before 'build 'pylint
+	      (lambda _
+		(invoke "pylint" "setup.py" "wsgi.py" "tests" "quality_control"
+			"qc_app" "r_qtl" "scripts")))
+	    (add-after 'pylint 'mypy
+	      (lambda _
+		(invoke "mypy" ".")))))))
+    (native-inputs
+     (modify-inputs (package-native-inputs gn-uploader)
+		    (prepend python-mypy)
+		    (prepend python-pylint)))))
+
+gn-uploader