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2023-08-15Rename probeset dataset name•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Introduce phenotype/genotype/probeset Dataset as a category•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Return "" for non-empty strings in string->identifier/annotate-field•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Update probeset dump•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Update how probesetfreeze metadata is dumped•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Replace "used" with "uses" in ontology•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Update how genotypes are dumped•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Use prism, fabio and dct ontologies to represent a publication•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Dump publishfreeze data•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Remove explicity cast when dumping strains•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-15Delete explicit sql-level utf-8 conversions•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-12Add comment on Strain tablePjotr Prins
2023-08-12Git repoPjotr Prins
2023-08-12Add git clonePjotr Prins
2023-08-12Add LICENSEPjotr Prins
2023-08-11Use correct encoding when writing to a file•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-09Update how phenotypes are dumped•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-09Add new line before dump title•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Update phenotype and publishfreeze dump•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Replace gnt:name/shortName with skos:label/altLabel•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Update publish-freeze dump•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Update how published datasets are dumped•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Replace gdmt:hasTitleInfo with skos:prefLabel•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Fix typo•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Update tissue dump•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Dump molecular traits•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-07Add extra metadata to gnc: and gnt: items•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-04Annotate terms related to species•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-04Add gnt:shortName to species dumpMunyoki Kilyungi
2023-08-04Updated species.ttl and sorted entriesPjotr Prins
2023-08-02Re-model how datasets are fetched•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-02Correct the associations between subject and object•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-02Introduce a vCard prefix to store metadata about an investigator•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-08-02README: add link to gemtextPjotr Prins
2023-08-02Added missing prefix to species.ttlPjotr Prins
2023-08-02species.ttl: added shortNamePjotr Prins
2023-08-02Species: added commentPjotr Prins
2023-08-02species: add entryPjotr Prins
2023-07-31Remove duplicate entries for alias/symbol/name when dumping strains•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Fix terms in inbredSet dump•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Update how MappingMethod, InbredSet and AvgMethod are modelled•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Update how strains are modelled•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Update how species are modelled•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Use the correct name for Monkey (Macaca nemestrina)•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Use remap-identifiers•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Merge branch 'master' into self-document-while-dumpingBonfaceKilz
2023-07-31Pass a default dump-directory when dumping table metadata•••* dump/schema-dump.scm (dump-data-table): Add extra optional arg "default-dump-directory". Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Add missing imports•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Add gnc: prefix•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Replace "gn-term" with "gnt" prefix•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi