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| author | Munyoki Kilyungi | 2024-07-10 11:48:24 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2024-07-10 11:49:55 +0300 |
| commit | f1a55971870a88c695a822549d702852e6fde123 (patch) | |
| tree | 6348e26c8ea3ee017eed1b12e6a5dcd84e392b05 | |
| parent | 891af1fc001f2f2da951dcee181c247083c6a40b (diff) | |
| download | gn-transform-databases-f1a55971870a88c695a822549d702852e6fde123.tar.gz | |
Remove the "generif-data-file" from the documentation.
Right now, we get the generif metadata from the GeneRIF_BASIC table.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rw-r--r-- | README.md | 10 |
1 files changed, 2 insertions, 8 deletions
@@ -44,8 +44,7 @@ shown below. Take care to replace the placeholders within angle brackets with the appropriate values. ``` scheme -((generif-data-file . "/path/to/generifs_basic.gz") - (sql-username . "<sql-username-here>") +((sql-username . "<sql-username-here>") (sql-password . "<sql-password-here>") (sql-database . "<sql-database-name-here>") (sql-host . "<sql-hostname-here>") @@ -58,14 +57,9 @@ with the appropriate values. (sparql-port . <sparql-endpoint-port-here>)) ``` -Download the GeneRIF data file from -https://ftp.ncbi.nih.gov/gene/GeneRIF/generifs_basic.gz and specify -its path in the `generif-data-file` parameter. - Here's a sample *conn.scm*. ``` scheme -((generif-data-file . "/home/gn/generifs_basic.gz") - (sql-username . "webqtlout") +((sql-username . "webqtlout") (sql-password . "my-secret-password") (sql-database . "db_webqtl") (sql-host . "localhost") |