Age | Commit message (Collapse) | Author |
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* generate-ttl-files.scm: New script.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Don't break paragraphs. It makes future edits easier to diff.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Document an example command to invoke to enable the actual
transformation of the data to be done.
This will need to be cleaned up, and the commands will also need to
check for the appropriate arguments before attempting to run in the
first place.
Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Right now, we get the generif metadata from the GeneRIF_BASIC table.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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The documentation for generating a transformation of a JSON file into
a Terse RDF Triple Language (Turtle) form was incomplete. This commit
provides a sample JSON file that can be used to demonstrate the
working of the code.
Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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The owners in the database is not a consistent comma separated list.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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This is done to match the RDF identifier.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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These are: "Experiment_Type", "Contributors" & "Citation" which are
already in RTF form.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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These triplets will be re-used when constructing the json-ld endpoints
for GN3.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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These triplets are now stored as text files and versioned in git.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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In the case of the GeneList_rn33 table, the table id is used, since
there is no other way to uniquely identify a gene using the other
fields. See the following for more details:
https://issues.genenetwork.org/issues/transform-genelist-to-rdf
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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A GeneSymbol != Gene.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* examples/generif.scm: Move definitions for gnt:hasGeneId from here to...
* examples/genelist.scm: ... here.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* .guix-channel, .guix/gn-transform-databases-package.scm, guix.scm:
New files.
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Disuse run64.
* Makefile (RUN64): Delete variable.
(GUILE): New variable.
(check): Use GUILE to run tests.
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