| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2023-07-30 | Rename dump-configuration slots | Munyoki Kilyungi | |
| * dump/special-forms.scm: Export dump-configuration? Rename dump-configuration-table-metadata -> dump-configuration-triples?; dump-configuration-table-dump -> dump-configuration-table-metadata?; and dump-configuration-auto-document-path -> dump-configuration-auto-documentation-port (<dump-configuration>): Ditto renames. (dump-configuration): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-30 | Make dumping optional, defaulting to #t | Munyoki Kilyungi | |
| There may be a case where one just wants to dump metadata about the s-exps only. | |||
| 2023-07-30 | Add table-dump? option to dump-configuration record | Munyoki Kilyungi | |
| * dump/special-forms.scm: Export dump-configuration-table-dump?. (<dump-configuration>): Add dump-configuration-table-dump. (dump-configuration): Make table-dump? default to #t. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-30 | Optionally self-document while dumping | Munyoki Kilyungi | |
| 2023-07-30 | Add a configuration record-type for for the define macro | Munyoki Kilyungi | |
| * dump/special-forms.scm: Import (srfi srfi-9 gnu). (<dump-configuration>): New record-type. (define-dump): Use the above record-type. | |||
| 2023-07-30 | Remap identifiers | Pjotr Prins | |
| 2023-07-30 | README: update | Pjotr Prins | |
| 2023-07-30 | Remap identifiers | Pjotr Prins | |
| 2023-07-29 | README fixes | Pjotr Prins | |
| 2023-07-29 | Updated species list | Pjotr Prins | |
| 2023-07-21 | Update wikidata metadata | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Add dct: prefix to genotype dump | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Update phenotype dump | Munyoki Kilyungi | |
| 2023-07-21 | Make define-dump take extra args as key | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Dump prefixes correctly when auto-generating docs | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Dump probesetfreeze metadata using new metadata | Munyoki Kilyungi | |
| 2023-07-21 | Dump probeset-metadata using the new syntax | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Dump genotypes with the new syntax | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Use "gn:" and "gn-term:" when dumping phenotypes | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Replace "publication:" with "pubmed:" | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Use "gn:" and "gn-terms" prefixes | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Make 'inputs' and 'outputs' fields lists | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Remove unnecessary prefixes | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Use a min of 4 should the schema triples be many | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Only document a triple if it exists | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Rename 'gn-id' prefix to 'gn' | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Replace :gn with :gn-id and :gn-term | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Dump phenotypes with documentation. | Munyoki Kilyungi | |
| 2023-07-21 | Make the default ontology "gn-id:" | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Dump probeset metadata with documentation | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Update tissue dump to use gn-term/gn-id | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Replace gn with gn-term and gn-id where suitable | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Use size of the results set to come up with sparql example | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Replace gn:species with gn-species | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Update dump-species to have lists for inputs and output | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Add "gn:species:" prefix | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Convert symbol to a string when show-casing triples in doc | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Capitalize species identifier | Munyoki Kilyungi | |
| Replace gn:species_mus_musculus with gn:species:Mus_musculus. | |||
| 2023-07-21 | Add string-capitalize-first | Munyoki Kilyungi | |
| * dump/strings.scm: Export string-capitalize-first (string-capitalize-first): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Make string->identifier take optional keyword args | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Make dump-data? default to #f when dumping data | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Rewrite dump-with-documentation to be order-agnostic | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Dump dataset metadata with documentation | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Dump publication metadata with documentation | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Dump tissue metadata with documentation | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Dump species metadata with documentation | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Conditionally dump documentation | Munyoki Kilyungi | |
| 2023-07-21 | Make prefix function have an optional ttl? | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-07-21 | Revert "Pass port as an optional argument" | Munyoki Kilyungi | |
| This reverts commit 195ca590be5533935cf708d49fcb3736b3c78643. | |||
| 2023-07-21 | Add missing srfi-26 import | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
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index : gn-transform-databases | |
| Data transformers for GeneNetwork (particularly to RDF) |
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