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gn-transform-databases
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Data transformers for GeneNetwork (particularly to RDF)
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Author
2023-07-30
Remap identifiers
Pjotr Prins
2023-07-29
README fixes
Pjotr Prins
2023-07-29
Updated species list
Pjotr Prins
2023-07-21
Update wikidata metadata
Munyoki Kilyungi
2023-07-21
Add dct: prefix to genotype dump
Munyoki Kilyungi
2023-07-21
Update phenotype dump
Munyoki Kilyungi
2023-07-21
Make define-dump take extra args as key
Munyoki Kilyungi
2023-07-21
Dump prefixes correctly when auto-generating docs
Munyoki Kilyungi
2023-07-21
Dump probesetfreeze metadata using new metadata
Munyoki Kilyungi
2023-07-21
Dump probeset-metadata using the new syntax
Munyoki Kilyungi
2023-07-21
Dump genotypes with the new syntax
Munyoki Kilyungi
2023-07-21
Use "gn:" and "gn-term:" when dumping phenotypes
Munyoki Kilyungi
2023-07-21
Replace "publication:" with "pubmed:"
Munyoki Kilyungi
2023-07-21
Use "gn:" and "gn-terms" prefixes
Munyoki Kilyungi
2023-07-21
Make 'inputs' and 'outputs' fields lists
Munyoki Kilyungi
2023-07-21
Remove unnecessary prefixes
Munyoki Kilyungi
2023-07-21
Use a min of 4 should the schema triples be many
Munyoki Kilyungi
2023-07-21
Only document a triple if it exists
Munyoki Kilyungi
2023-07-21
Rename 'gn-id' prefix to 'gn'
Munyoki Kilyungi
2023-07-21
Replace :gn with :gn-id and :gn-term
Munyoki Kilyungi
2023-07-21
Dump phenotypes with documentation.
Munyoki Kilyungi
2023-07-21
Make the default ontology "gn-id:"
Munyoki Kilyungi
2023-07-21
Dump probeset metadata with documentation
Munyoki Kilyungi
2023-07-21
Update tissue dump to use gn-term/gn-id
Munyoki Kilyungi
2023-07-21
Replace gn with gn-term and gn-id where suitable
Munyoki Kilyungi
2023-07-21
Use size of the results set to come up with sparql example
Munyoki Kilyungi
2023-07-21
Replace gn:species with gn-species
Munyoki Kilyungi
2023-07-21
Update dump-species to have lists for inputs and output
Munyoki Kilyungi
2023-07-21
Add "gn:species:" prefix
Munyoki Kilyungi
2023-07-21
Convert symbol to a string when show-casing triples in doc
Munyoki Kilyungi
2023-07-21
Capitalize species identifier
Munyoki Kilyungi
2023-07-21
Add string-capitalize-first
Munyoki Kilyungi
2023-07-21
Make string->identifier take optional keyword args
Munyoki Kilyungi
2023-07-21
Make dump-data? default to #f when dumping data
Munyoki Kilyungi
2023-07-21
Rewrite dump-with-documentation to be order-agnostic
Munyoki Kilyungi
2023-07-21
Dump dataset metadata with documentation
Munyoki Kilyungi
2023-07-21
Dump publication metadata with documentation
Munyoki Kilyungi
2023-07-21
Dump tissue metadata with documentation
Munyoki Kilyungi
2023-07-21
Dump species metadata with documentation
Munyoki Kilyungi
2023-07-21
Conditionally dump documentation
Munyoki Kilyungi
2023-07-21
Make prefix function have an optional ttl?
Munyoki Kilyungi
2023-07-21
Revert "Pass port as an optional argument"
Munyoki Kilyungi
2023-07-21
Add missing srfi-26 import
Munyoki Kilyungi
2023-07-21
Create a new procedure for shadowing a file port
Munyoki Kilyungi
2023-07-21
Rename auto-documentation-port -> path
Munyoki Kilyungi
2023-07-21
Move dump-configuration record type to (dump documentation)
Munyoki Kilyungi
2023-07-21
Construct example SQL query and expected results
Munyoki Kilyungi
2023-07-21
Pass port to scm->triples
Munyoki Kilyungi
2023-07-21
Pass port as an optional argument
Munyoki Kilyungi
2023-07-21
Print out triples with the from Table.Name or Table.Alias
Munyoki Kilyungi
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