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Data transformers for GeneNetwork (particularly to RDF)
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2024-07-29
Add a script for generating the TTL files.
Munyoki Kilyungi
2024-07-19
Add comment.
Munyoki Kilyungi
2024-07-15
Add missing RIF symbols.
Munyoki Kilyungi
2024-07-10
Replace "FIXME" with relevant info in the docs.
Munyoki Kilyungi
2024-07-10
Unfill paragraphs.
Munyoki Kilyungi
2024-07-10
Document running actual transformation scripts
Frederick Muriuki Muriithi
2024-07-10
Rename script: Give file a more relevant name.
Frederick Muriuki Muriithi
2024-07-10
Replace "dump" -> "transform" where relevant.
Munyoki Kilyungi
2024-07-10
Remove the "generif-data-file" from the documentation.
Munyoki Kilyungi
2024-07-10
Provide sample JSON file and update instruction in docs
Frederick Muriuki Muriithi
2024-05-20
Add pointers to git metadata in RDF for the dataset metadata.
Munyoki Kilyungi
2024-05-15
manifest.scm: Use upstream ccwl.
Munyoki Kilyungi
2024-05-15
Use a set to represent a phenotype's owner.
Munyoki Kilyungi
2024-05-15
Replace rdfs:label with gnt:traitId for Phenotypes.
Munyoki Kilyungi
2024-02-15
Refactor how changes are committed and pushed.
Munyoki Kilyungi
2024-02-15
Remove call to string-append when defining dir-name local var.
Munyoki Kilyungi
2024-02-15
Filter out files that only have "None".
Munyoki Kilyungi
2024-02-14
Capitalize the first string of every path.
Munyoki Kilyungi
2024-02-13
Convert extra dataset metadata to text-files.
Munyoki Kilyungi
2024-02-13
Remove more fields from dataset's RDF output.
Munyoki Kilyungi
2024-02-13
Fix missplaced parens.
Munyoki Kilyungi
2024-02-09
Re-add triplets that describe dataset terms.
Munyoki Kilyungi
2024-02-09
Update push and reset git commands.
Munyoki Kilyungi
2024-02-09
Use correct path to the datasets directory.
Munyoki Kilyungi
2024-02-08
Delete rdf triplets from dataset transform.
Munyoki Kilyungi
2024-02-08
Add method for commiting changes to the gn-docs git repo.
Munyoki Kilyungi
2024-02-08
Delete unused variable in the getopts arglist.
Munyoki Kilyungi
2024-02-08
Fix typo.
Munyoki Kilyungi
2024-02-08
Fix how the dataset directory is constructed.
Munyoki Kilyungi
2024-02-08
Remove "string->identifier" for the dataset directory name.
Munyoki Kilyungi
2024-02-08
Use correct format string literal when printing out sql results.
Munyoki Kilyungi
2024-02-08
Update local git-repo directory.
Munyoki Kilyungi
2024-02-08
Add a basic guile script to transform stored rtf data to files.
Munyoki Kilyungi
2024-01-08
Add InfoFiles.Experiment_Type metadata.
Munyoki Kilyungi
2024-01-05
Correct formatting for the gnt:location predicate for ProbeSets.
Munyoki Kilyungi
2023-12-22
Fix typo with pantherLink ResourceLink.
Munyoki Kilyungi
2023-12-22
Use correct property for classifying pantherLink as a resource.
Munyoki Kilyungi
2023-12-22
Delete duplicate entries for gnc:biogpsLink/gnc:gtexLink.
Munyoki Kilyungi
2023-12-22
Update handling of RGD_ID field in genelist metadata transform.
Munyoki Kilyungi
2023-12-22
Replace gnt:symbol with gnt:geneSymbol.
Munyoki Kilyungi
2023-12-22
Refactor gene metadata RDF transform.
Munyoki Kilyungi
2023-12-22
Replace gnc:GeneSymbol with gnc:Gene.
Munyoki Kilyungi
2023-12-22
Delete "GROUP BY" when transforming genelist/genelist_rn33 metadata.
Munyoki Kilyungi
2023-12-22
Use gnt:geneSymbol instead of rdfs:label/gnt:symbol.
Munyoki Kilyungi
2023-12-22
Use gnt:hasGeneId instead of gnt:gene/dct:references.
Munyoki Kilyungi
2023-12-22
Move gnt:hasGeneId definitions to genelist.scm
Munyoki Kilyungi
2023-12-20
Set up as Guix channel for CI.
Arun Isaac
2023-12-20
Use guile to run tests.
Arun Isaac
2023-12-20
Set correct top level module directory.
Arun Isaac
2023-12-20
Fix srfi-26 import typo.
Arun Isaac
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