diff options
| -rwxr-xr-x | examples/generif.scm | 16 |
1 files changed, 9 insertions, 7 deletions
diff --git a/examples/generif.scm b/examples/generif.scm index d25b0f1..d6b8b25 100755 --- a/examples/generif.scm +++ b/examples/generif.scm @@ -46,19 +46,21 @@ (left-join Species "USING (SpeciesId)")) "GROUP BY GeneId ORDER BY BINARY symbol") (schema-triples - (gnt:symbol rdfs:domain gn-term:geneWikiEntry) - (gnt:wikiEntryOfSpecies rdfs:range gn:species) - (gnt:taxid rdfs:domain gn-term:geneWikiEntry)) + (gnt:belongsToSpecies rdfs:domain gnc:strain) + (gnt:belongsToSpecies rdfs:domain gnc:NCBIWikiEntry) + (gnt:symbol rdfs:domain gnc:NCBIWikiEntry)) (triples (ontology 'generif: (field GeneRIF_BASIC GeneId)) (multiset gnt:symbol (string-split (field ("GROUP_CONCAT(DISTINCT symbol)" symbol)) #\,)) - (multiset gnt:wikiEntryOfSpecies + (multiset gnt:belongsToSpecies (string-split (field ("GROUP_CONCAT(DISTINCT Species.SpeciesName)" species)) #\,)) - (multiset gnt:taxId (map (cut ontology 'ncbiTaxon: <>) - (string-split (field ("GROUP_CONCAT(DISTINCT TaxID)" taxId)) - #\,))))) + (multiset dct:relation + (map + (cut ontology 'ncbiTaxon: <>) + (string-split (field ("GROUP_CONCAT(DISTINCT TaxID)" taxId)) + #\,))))) (define-transformer gn-genewiki-entries (tables (GeneRIF |