Initial commit

1 files changed, 25 insertions, 0 deletions

diff --git a/rdf.py b/rdf.py
new file mode 100644
index 0000000..c2bd5e4
--- /dev/null
+++ b/rdf.py
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+import os.path
+from pathlib import Path
+from rdflib import Graph
+
+graph = Graph()
+graph.parse(location=os.path.join(Path.home(), 'data/dump/dump.ttl'),
+            format='text/turtle')
+
+query = """
+PREFIX gn: <https://genenetwork.org/>
+
+SELECT ?name ?binomial
+WHERE {
+  ?species rdf:type gn:species .
+  ?strain rdf:type gn:strain .
+  ?strain gn:name "JN9" .
+  ?strain gn:strainOfSpecies ?species .
+
+  ?species gn:name ?name .
+  ?species gn:binomialName ?binomial .
+}
+"""
+
+for result in graph.query(query):
+    print(result)