From b6cb5c4d2c64781122223d4ee100a0d6f3dd03b9 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Fri, 27 Aug 2021 05:49:11 -0500
Subject: Initial commit

---
 rdf.py | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)
 create mode 100644 rdf.py

(limited to 'rdf.py')

diff --git a/rdf.py b/rdf.py
new file mode 100644
index 0000000..c2bd5e4
--- /dev/null
+++ b/rdf.py
@@ -0,0 +1,25 @@
+import os.path
+from pathlib import Path
+from rdflib import Graph
+
+graph = Graph()
+graph.parse(location=os.path.join(Path.home(), 'data/dump/dump.ttl'),
+            format='text/turtle')
+
+query = """
+PREFIX gn: <https://genenetwork.org/>
+
+SELECT ?name ?binomial
+WHERE {
+  ?species rdf:type gn:species .
+  ?strain rdf:type gn:strain .
+  ?strain gn:name "JN9" .
+  ?strain gn:strainOfSpecies ?species .
+
+  ?species gn:name ?name .
+  ?species gn:binomialName ?binomial .
+}
+"""
+
+for result in graph.query(query):
+    print(result)
-- 
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